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Anopheles gambiae
cluster # 3791 cluster # 3791       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3791#0 length = 743 sequences # 1  
consensus_3791#1 length = 733 sequences # 2  

consensusID : consensus_3791#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 743
fasta sequence
                              [CAAGAATCCCCCGAGGTTTGCACGCAGAATAGCACACATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGAACACACTTCCCGATCGAAGACACTGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCGTATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGGAGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTACGTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTCCTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTGAACGTANAC]

[+] EMBL AL694017             [CAAGAATCCCCCGAGGTTTGCACGCAGAATAGCACACATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGAACACACTTCCCGATCGAAGACACTGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCGTATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGGAGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTACGTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTCCTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTGAACGTANAC]


>consensus_3791#0 CAAGAATCCCCCGAGGTTTGCACGCAGAATAGCACACATTGACCCTTCGAAGAGGCGACG GGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGC TCTTCCGATTCGGGAACGGCTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACG CATTGACGATGAGATGTGAACACACTTCCCGATCGAAGACACTGCACATGAATGCACAAA ATACGCTCAATTCAACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAG ACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAG TAGACCAAACTCCGTATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAAC ATGGACCCGTTGGGAGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCAT CTGCTCCCTTGTACGTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCA GCACTGTCNTNGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGC CNCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACAC ATTACGCTTCTCTCCTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCAC CAGCCAACCCCTTGAACGTANAC



consensusID : consensus_3791#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 733
fasta sequence
                              [GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCCGCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTGCACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATCTGCTCCCTTGTCGTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGGTGCAGACTGTTTTGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTGTTCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGTGATTCTACACATTCGCTTCTCTCCTTACCGTCGATGCCTCTCTATCCAACC]

[+] EMBL BX612810             [GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCCGCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTGCACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATCTGCTCCCTTGTCGTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGGTGCAGACTGTTTTGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTGTTCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGTGATTCTACACATTCGCTTCTCTCCTTACCGTCGATGCCTCTCTATCCAACC]
[+] EMBL BX614517             [                                                                                                                                                                    TAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATC                                                                                                                                                                                                                  ]


>consensus_3791#1 GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCC GCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTG CACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAAT TAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGG CTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAA CACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAA CGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACT GTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGG CTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATCTGCTCCCTTGTCGTGTG TTTGATCAAACATGTGCGGCAAGAGAACATAGCGGTGCAGACTGTTTTGCGCCAAGCGCT GCTTCCCATGCACCGTGCGTTGACGGAGTTTTTGTTCGGCCAGGCGCATTCGTCCCAGCA CTTCAGTCCACTTCAGCTGCGTGATTCTACACATTCGCTTCTCTCCTTACCGTCGATGCC TCTCTATCCAACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3791#0      ------------------------------------------------------------
consensus_3791#1      GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCC 60
                                                                                  

consensus_3791#0      ---------------------------------------CAAGAATCCCCCGAGGTT-TG 20
consensus_3791#1      GCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTG 120
                                                             *  *  * *  *   **  **

consensus_3791#0      CACGCAGAATAGCACAC-ATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAAT 79
consensus_3791#1      CACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAAT 180
                      ***************** ******************************************

consensus_3791#0      TAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGG 139
consensus_3791#1      TAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGG 240
                      ************************************************************

consensus_3791#0      CTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGA 199
consensus_3791#1      CTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGA-GATGAGATGTGA 299
                      ********** ************************************ ************

consensus_3791#0      ACACACTTCCCGATCGAAGACAC-----TGCACATGAATGCACAAAATACGCTCAATTCA 254
consensus_3791#1      ACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCA 359
                      ***********************     ********************************

consensus_3791#0      ACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATAC 314
consensus_3791#1      ACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATAC 419
                      ******* * **************************************************

consensus_3791#0      TGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCG 374
consensus_3791#1      TGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGG----------------------- 456
                      *************************************                       

consensus_3791#0      TATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGG 434
consensus_3791#1      ---------------------------------------CTCAAACATGGACCCGTTGGG 477
                                                             *********************

consensus_3791#0      AGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTAC 494
consensus_3791#1      AGGCTGTCGAAATTATCAATTGCTATCCG-TGCTGGCTCAGCGCATCTGCTCCCTTGT-C 535
                      ******** *************** **** **************************** *

consensus_3791#0      GTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCG 554
consensus_3791#1      GTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGG--TGCAG-ACTGT-TTTGCG 591
                      ******  ****************************** *  ***** *****  * ***

consensus_3791#0      CCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCA 614
consensus_3791#1      CCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTG---TTCGGCCAGGCGCA 648
                      ***************************** ******* **        ************

consensus_3791#0      TTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTC 674
consensus_3791#1      TTCGTCCCAGCACTTCAGTCCACTTCAGCTGCG-TGA-TTCTACACATT-CGCTTCTCTC 705
                      ********************************* *** *********** **********

consensus_3791#0      CTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTG 734
consensus_3791#1      CTTACCGTCGA--TGCCTCTCTATCC-AACC----------------------------- 733
                      **********   ************* ****                             

consensus_3791#0      AACGTANAC 743
consensus_3791#1      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)