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Anopheles gambiae
cluster # 3800 cluster # 3800       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3800#0 length = 1014 sequences # 2  
consensus_3800#1 length = 776 sequences # 1  

consensusID : consensus_3800#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1014
fasta sequence
                              [TCCCCGAGGTTTAATGGCAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGG-TGGAATTAACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGA-CTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCT-CTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGNTGGACGTNGTGCGAGCCTGTACGATACTGNATGTGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGTCCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCCGGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCANGAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGATTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGGCCNGCTACGAACNNCACTACCTTAAAAC]

[+] EMBL AL694172             [TCCCCGAGGTTTAATGGCAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGG TGGAATTAACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGA CTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCT CTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AL929921             [                                                                                                        ggttAAAAC AGGACGAGTTTCGGNNGGAAT  ACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTACTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGNTGGACGTNGTGCGAGCCTGTACGATACTGNATGTGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGTCCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCCGGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCANGAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGATTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGGCCNGCTACGAACNNCACTACCTTAAAAC]


>consensus_3800#0 TCCCCGAGGTTTAATGGCAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGG AGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACG AGTTTCGGTGGAATTAACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCC GGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTT GGAATCGATTTCGGAACCTGATTCCGGACTAATATCCGGAATCGATTCCAGAAAACTGCG GAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGAT GTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAG GGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGC GGCAGCCCAGGACTGAGCTCTCTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTT ACGGCCGGGAGGAATTGCTTTTCGACGCAGAAAGATGCTCAGAAGGATTTTTAAGCCCCG CAAGATAGGAACAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGNTGGACGT NGTGCGAGCCTGTACGATACTGNATGTGGCTGGTCATGTANTACGCNCTGGAACCGAACG ACTTGATGGGCTCCCCGTAAAAAGGTCCTTTATACGGGTNCNGTACAACAACAAAGGGAT TAGACNGGAAGTCACCNGTTGAANCCGGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTA ACCCGCGAATCCGCGCAGACTGGCANGAAACCGTTGACANGCATCAAGCCNATTCCCGAC ACCACTCTCTGCAAACTNACCAACGATTACCCAGGTCNGCGCANACAGNCTGGNCTACGT CACCACTGTNTTTCAACTNAACATGGCCNGCTACGAACNNCACTACCTTAAAAC



consensusID : consensus_3800#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 776
fasta sequence
                              [AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAGAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAAAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGCTGTACGATACTGTTATGTGGCTGGTCATGTATACGCATGGAACCGAACGACTTGATGGCTCCCCGTAAAGTCCTTTTAGGTCGTCACACAAGGATAGAGGGAGTCACGTGACAGGTTGGAATGGG]

[+] EMBL BX607007             [AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAGAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAAAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGCTGTACGATACTGTTATGTGGCTGGTCATGTATACGCATGGAACCGAACGACTTGATGGCTCCCCGTAAAGTCCTTTTAGGTCGTCACACAAGGATAGAGGGAGTCACGTGACAGGTTGGAATGGG]


>consensus_3800#1 AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGG AATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAG TTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGGAATC AATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACC TGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGA TTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGG AGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTG AGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAG CTCTCTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTG CTTTTCGAGAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAAAGATCGAT GGATGAGCCGATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGCTGTACGATA CTGTTATGTGGCTGGTCATGTATACGCATGGAACCGAACGACTTGATGGCTCCCCGTAAA GTCCTTTTAGGTCGTCACACAAGGATAGAGGGAGTCACGTGACAGGTTGGAATGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3800#0      -----------------------------TCCCCGAGGTTTAATGGCA-GAATTCTATGG 30
consensus_3800#1      AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGG 60
                                                    *   *  *   ******* ***********

consensus_3800#0      AATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAG 90
consensus_3800#1      AATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAG 120
                      ************************************************************

consensus_3800#0      TTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGATTCC 150
consensus_3800#1      TTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTAT--------- 171
                      ***************************************************         

consensus_3800#0      GGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTT 210
consensus_3800#1      ---------------------------------------TCCGGAATCAATACTGGATTT 192
                                                             *********************

consensus_3800#0      GATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGAC- 269
consensus_3800#1      GATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACC 252
                      *********************************************************** 

consensus_3800#0      TAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAG 329
consensus_3800#1      TAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAG 312
                      ************************************************************

consensus_3800#0      CTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACC 389
consensus_3800#1      CTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACC 372
                      ************************************************************

consensus_3800#0      CGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTC 449
consensus_3800#1      CGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTC 432
                      ************************************************************

consensus_3800#0      CCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCC 509
consensus_3800#1      CCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCC 492
                      ************************************************************

consensus_3800#0      CGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCA 569
consensus_3800#1      CGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAG--A 550
                      ********************************************************   *

consensus_3800#0      GAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCC 629
consensus_3800#1      GAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAA-AGATCGATGGATGAGCC 609
                      ****************************************** *****************

consensus_3800#0      GATACAACTTGTACGAGTGCGTGNTGGACGTN--GTGCGAGCCTGTACGATACTGN-ATG 686
consensus_3800#1      GATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGC-TGTACGATACTGTTATG 668
                      *********************** *******   ******** ************  ***

consensus_3800#0      TGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGT 746
consensus_3800#1      TGGCTGGTCATGTAT-ACGCA-TGGAACCGAACGACTTGATGG-CTCCCCGTAAA---GT 722
                      **************  ****  ********************* ***********   **

consensus_3800#0      CCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCC 806
consensus_3800#1      CCTTT-TA-GGTCGTCACACAAGGATAGAGGGAGTC------ACGTGACAGGTTGGAATG 774
                      ***** ** **       ****  * * ***** *       * ** **  **** *   

consensus_3800#0      GGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCAN 866
consensus_3800#1      GG---------------------------------------------------------- 776
                      **                                                          

consensus_3800#0      GAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGA 926
consensus_3800#1      ------------------------------------------------------------
                                                                                  

consensus_3800#0      TTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGG 986
consensus_3800#1      ------------------------------------------------------------
                                                                                  

consensus_3800#0      CCNGCTACGAACNNCACTACCTTAAAAC 1014
consensus_3800#1      ----------------------------
                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)