These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [CCCCGAGGTTAGTGAACATGAAAAAATGAAAANAATCAGTGAAATAGATAAAAAACGAACGTAAACACAACAGAAAATCACAACAAAATGCACAACGAATAGTAAGAAACCCCCATGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAGAAACAAAAGAGGTAAACATAATAACCTCCAATGAAGCCGGCACAAACGGAAAGTCCTCGATGTAAGCAACCACTAGGCCGCCACAAACTGTGAATCCTTGCGCGAGCCCAGGCTGAGTAGTGTTGTCCGAAAATTGGAAAATGAAACTTGACCCGCTGGGCTTGCGAACAACCCAGAGCCAAGGGGAAGGTGAACCCAACTGCCAACTGTCTATNATCTGTGCGTTAAAGTTGCCTGTAAGTAATTCTCTTCATGTTTCTCCAAAACCACTCACACCGCACTCCCCGGATTGGTTCTATCTTCCAACCACAGTACTGGAACAGCAGCTGTGCCAGAGAACAGTANTGAACTGAATGGCCGAGAGGAAAANTTTANNGCCACGCGTGTATTATGCTGGGCTGGGGCCGGGAAGCCGTNACACGTTGGGCTGTAACTTAGANCTTATCTCTCGTAAAGTCAATCCAAAGACCTACCCTCCCCCGGGCTGAAGATGGGNGAAANGGGACGACCTTTNATGCCAGCGCAGANACGGTGGCACGACCA] [+] EMBL AL694569 [CCCCGAGGTTAGTGAACATGAAAAAATGAAAANAATCAGTGAAATAGATAAAAAACGAACGTAAACACAACAGAAAATCACAACAAAATGCACAACGAATAGTAAGAAACCCCCATGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAGAAACAAAAGAGGTAAACATAATAACCTCCAATGAAGCCGGCACAAACGGAAAGTCCTCGATGTAAGCAACCACTAGGCCGCCACAAACTGTGAATCCTTGCGCGAGCCCAGGCTGAGTAGTGTTGTCCGAAAATTGGAAAATGAAACTTGACCCGCTGGGCTTGCGAACAACCCAGAGCCAAGGGGAAGGTGAACCCAACTGCCAACTGTCTATNATCTGTGCGTTAAAGTTGCCTGTAAGTAATTCTCTTCATGTTTCTCCAAAACCACTCACACCGCACTCCCCGGATTGGTTCTATCTTCCAACCACAGTACTGGAACAGCAGCTGTGCCAGAGAACAGTANTGAACTGAATGGCCGAGAGGAAAANTTTANNGCCACGCGTGTATTATGCTGGGCTGGGGCCGGGAAGCCGTNACACGTTGGGCTGTAACTTAGANCTTATCTCTCGTAAAGTCAATCCAAAGACCTACCCTCCCCCGGGCTGAAGATGGGNGAAANGGGACGACCTTTNATGCCAGCGCAGANACGGTGGCACGACCA] consensusID : consensus_3803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [TTGCCCGAGGTTAAAAAGAAAACGAAACAAAACANCAACAAAAACTTCTGCTAGAAATCGAACGAAAAAAAAACATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCACACCAACTTCAGTCCGTCATGGCAGTATTAACAAGTTAATTCAACAGCCATTTCATCAAAAGCCGGGCATCACACAGGTAGGAAGTTCAAAGCAGAAACAAGGACACAATCACCAGCAGCAAACACACACAAGCAATTAACCTAAAACGCCTATTATAATCGGACAACAGAGAACAAGAGAAGCCAAACAGCATATAAGCAAAGCAGCAGCAAAGCAGAGCAAACAAGCAAACCCAGTAGTGTGATAGTGCATGCAAAGTGAACATGAACCACACATGAACAAAAATCAGTGAAATAGAAAAAAACGAACGTAAACACAACAGAAAAGTCACAAGCAAAATGCACAACGAATAGTAAGAAACCCCCATGGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAGAACANACAAGAGGTAAACATAATAACCTCCA] [+] EMBL AL694213 [TTGCCCGAGGTTAAAAAGAAAACGAAACAAAACANCAACAAAAACTTCTGCTAGAAATCGAACGAAAAAAAAACATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCACACCAACTTCAGTCCGTCATGGCAGTATTAACAAGTTAATTCAACAGCCATTTCATCAAAAGCCGGGCATCACACAGGTAGGAAGTTCAAAGCAGAAACAAGGACACAATCACCAGCAGCAAACACACACAAGCAATTAACCTAAAACGCCTATTATAATCGGACAACAGAGAACAAGAGAAGCCAAACAGCATATAAGCAAAGCAGCAGCAAAGCAGAGCAAACAAGCAAACCCAGTAGTGTGATAGTGCATGCAAAGTGAACATGAACCACACATGAACAAAAATCAGTGAAATAGAAAAAAACGAACGTAAACACAACAGAAAAGTCACAAGCAAAATGCACAACGAATAGTAAGAAACCCCCATGGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAGAACANACAAGAGGTAAACATAATAACCTCCA] consensusID : consensus_3803#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [CCGGGTGTATAAAAGTGAAAGACTCAGACTAGAGTGCGCAAAACCGAAACGCATTACGAAGCATTAACACGTACTAATCTAAGCATGGCTGCGATTAAACTAAACAACAATAACACAAAAAAGTAATGTAAAAACGTAAAAACCCTGTTACTCAAAACGCAAAACCACCGTGAATGGTGCTGTATAGTTAAAAGAAGAACAAACAACCGCTAAATTGAAGAAAATTAAAATAAAAAAAAACAAACACTGCTACACAAACACGCAAAAAGAAAACGAAACAAGACAACAACAAAAACTTCTGCTAGAAATCGAACAAAAAAAAAAATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCAACAACTTAGTCGTATGGAGTGTAACAAGTAATTAAAGCATTTATAAAGCGGGATCACACAGTAGAAGTTAAAGCAGAAAAAGAAAATACAGAAAAAAAGAATAACTAAAACGCTATTATAATCAGAAAAGAGACAAGAGAAACGAACAGACATAAGAAAGAGAAAGAGAGAGAAAAAGAAACCCAGTAGTGTGATAGTGATAAAAGTG] [+] EMBL BM575205 [CCGGGTGTATAAAAGTGAAAGACTCAGACTAGAGTGCGCAAAACCGAAACGCATTACGAAGCATTAACACGTACTAATCTAAGCATGGCTGCGATTAAACTAAACAACAATAACACAAAAAAGTAATGTAAAAACGTAAAAACCCTGTTACTCAAAACGCAAAACCACCGTGAATGGTGCTGTATAGTTAAAAGAAGAACAAACAACCGCTAAATTGAAGAAAATTAAAATAAAAAAAAACAAACACTGCTACACAAACACGCAAAAAGAAAACGAAACAAGACAACAACAAAAACTTCTGCTAGAAATCGAACAAAAAAAAAAATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCAACAACTTAGTCGTATGGAGTGTAACAAGTAATTAAAGCATTTATAAAGCGGGATCACACAGTAGAAGTTAAAGCAGAAAAAGAAAATACAGAAAAAAAGAATAACTAAAACGCTATTATAATCAGAAAAGAGACAAGAGAAACGAACAGACATAAGAAAGAGAAAGAGAGAGAAAAAGAAACCCAGTAGTGTGATAGTGATAAAAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3803#1 TTGCCCGAGGTTAAAAAGAAAACGAAACAAAACANCAACAAAAACTTCTGCTAGAAATCG 60 consensus_3803#2 ---CCGGGTGTATAAAAGTGAAAGACTCAGACTAG-AGTGCGCAAAACCGAAACGCATT- 55 consensus_3803#0 --CCCCGAGGTTAGTGAACATGAAAAAATGAAAAN-AATCAGTGAAATAGATAAAAAACG 57 ** * ** * * * * * * * * consensus_3803#1 AACGAAAAAAAAACATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCT 120 consensus_3803#2 -ACGAAGCATTAACACGTACTAATCTAA-GCATGGCTGCGATTAAACTAAACAACAATAA 113 consensus_3803#0 AACGTAAACACAACAGAAAATCACAACAAAATGCACAACGAATAG--TAAGAAACCCCCA 115 *** * **** * * * * * * ** consensus_3803#1 TCTAATACTACAAAGTAA-GCAAAGCGTGCATGTGTGCACACCAACT--TCAGTCCGTCA 177 consensus_3803#2 CACAAAAAAGTAATGTAA-AAACGTAAAAACCCTGTTACTCAAAACG--CAAAACCACCG 170 consensus_3803#0 TGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCG 175 ** * * * * ** * * consensus_3803#1 TGG-CAGTATTAACAAGTTAATTCAACAGCCATTTCATCAAAAGCCGGGCATCACACAGG 236 consensus_3803#2 TGAATGGTGCTGTATAGTTAAAAGAAGAACAAACAACCGCTAAATTGAAGAAAATTAAAA 230 consensus_3803#0 TTAGAAGAAAAAAGAAACAAAAGAGGTAAACATAATAACCTCCAATGAAGCCGGCACAAA 235 * * * ** * * * * consensus_3803#1 TAGGAAGTTCAAAGCAGAAACAAGGACACAATCAC---CAGCAGCAAACACACACAAGCA 293 consensus_3803#2 TAAAAA----AAAACAAACACTGCTACACAAACACG--CAAAAAGAAAACGAAACAAGAC 284 consensus_3803#0 CGGAAAGTCCTCGATGTAAGCAACCACTAGGCCGCCACAAACTGTGAATCCTTGCGCGAG 295 ** * * ** * * * ** * * consensus_3803#1 ATTAA-CCTAAAACGCCTATTATAATCGGACAACAGAGAACAAGAGAAGCCAA-ACAGCA 351 consensus_3803#2 AACAA-CA-AAAACTTCTGCTAGAAATCGA--ACAAAAAAAAAAATACATCAACATAATA 340 consensus_3803#0 CCCAGGCTGAGTAGTGTTGTCCGAAAATTGGAAAATGAAACTTGACCCGCTGGGCTTGCG 355 * * * * * ** * * ** * consensus_3803#1 TATAAGCAAAG--CAGCAGCAAAGCAGAGCAAACAAGCAA-ACCCAGTAGTGTGATAGTG 408 consensus_3803#2 CGTGGCCTTAG--CTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTG 398 consensus_3803#0 AACAACCCAGAGCCAAGGGGAAGGTGAACCCAACTGCCAACTGTCTATNATCTGTGCGTT 415 * * * * * * ** consensus_3803#1 CA---TGCAAAGTGAACATGAACCACACATGA-ACAAAAATCAGTGAAATAGAAAAAAAC 464 consensus_3803#2 CA---TGTGTGCAACAACTTAGTCGTATGGAGTGTAACAAGTAATTAAAGCATTTATAA- 454 consensus_3803#0 AAAGTTGCCTGTAAGTAATTCTCTTCATGTTTCTCCAAAACCACTCACACCGCACTCCCC 475 * ** * * * ** * * * * consensus_3803#1 GAACGTAAACACAACAGAAAAGTCACAAGCAAAATGCACAACGAATAGTAAGAAACCCCC 524 consensus_3803#2 -AGCGGGATCACACAGTAGAAGTTA-AAGCAGAAAA-AGAAAATACAGAAAAAAAGAATA 511 consensus_3803#0 GGATTGGTTCTATCTTCCAACCACAGTACTGGAACA--GCAGCTGTGCCAGAGAACAGTA 533 * * * * ** * * ** consensus_3803#1 ATGGCAAAGCTA--ACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGC 582 consensus_3803#2 ACTAAAACGCTATTATAATCAGAAAAGAGACAAGAGAAACGAACAGACATAAGAAAGAGA 571 consensus_3803#0 NTGAACTGAATGGCCGAGAGGAAAANTTTANNGCCACGCGTGTATTATGCTGGGCTGGGG 593 * * ** * * consensus_3803#1 TCCGTTAGAAGAAAAAAGAACANACAAGAGGTAAACATAATAACCTCCA----------- 631 consensus_3803#2 AAGAGAGAGAAAAAGAAACCCAGTAGTGTGATAGTGATAAAAGTG--------------- 616 consensus_3803#0 CCGGGAAGCCGTNACACGTTGGGCTGTAACTTAGANCTTATCTCTCGTAAAGTCAATCCA 653 * * ** * * consensus_3803#1 ------------------------------------------------------------ consensus_3803#2 ------------------------------------------------------------ consensus_3803#0 AAGACCTACCCTCCCCCGGGCTGAAGATGGGNGAAANGGGACGACCTTTNATGCCAGCGC 713 consensus_3803#1 ------------------- consensus_3803#2 ------------------- consensus_3803#0 AGANACGGTGGCACGACCA 732 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||