These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CCGCGGACGCGTGGGCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTTCTGCGGCTGCTAAAGCCCTCGAACGGCTCGCTCGGTG] [+] EMBL BM655990 [CCGCGGACGCGTGGGCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTTCTGCGGCTGCTAAAGCCCTCGAACGGCTCGCTCGGTG] consensusID : consensus_3813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [CCGGGGACCGCGATTGGTGCGGCTGTCATCGGCGCAGGAGGAATCACCCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTT] [+] EMBL BM582474 [CCGGGGACCGCGATTGGTGCGGCTGTCATCGGCGCAGGAGGAATCACCCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTT] consensusID : consensus_3813#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTCCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTGCCTGGTGGTCAGTGCCTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGA] [+] EMBL BM603236 [CCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTCCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTGCCTGGTGGTCAGTGCCTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3813#0 -------------------------CCGCGGACGCGTGGG--------CGACAGGGAAAA 27 consensus_3813#1 CCGGGGACCGCGATTGGTGCGGCTGTCATCGGCGCAGGAGGAATCACCCGACAGGGAAAA 60 consensus_3813#2 -----------------------------------------------CCCACGCGTCCGC 13 * ** * consensus_3813#0 ACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCT 87 consensus_3813#1 ACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCT 120 consensus_3813#2 CCACGCGTCCGCCCACGCGTCCGTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCT 73 ** * *** * ************************************* consensus_3813#0 AGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGT 147 consensus_3813#1 AGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGT 180 consensus_3813#2 AGCCGGCGAACAGAAGCGTCTCCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGT 133 ********************* ************************************** consensus_3813#0 CCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTC 207 consensus_3813#1 CCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTC 240 consensus_3813#2 CCGCTGGTTGCCCC-CGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTC 192 ************** ********************************************* consensus_3813#0 T-CCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCG 266 consensus_3813#1 T-CCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCG 299 consensus_3813#2 TGCCTGGTGGTCAGTGCCTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCG 252 * *************** ****************************************** consensus_3813#0 GCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTG 326 consensus_3813#1 GCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTG 359 consensus_3813#2 GCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTG 312 ************************************************************ consensus_3813#0 TC-GTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGT 385 consensus_3813#1 TC-GTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGT 418 consensus_3813#2 TCCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGT 372 ** ********************************************************* consensus_3813#0 GTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGT 445 consensus_3813#1 GTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGT 478 consensus_3813#2 GTACGA------------------------------------------------------ 378 ****** consensus_3813#0 GCGCGAGATTTGCGACAAATTTCTGCGGCTGCTAAAGCCCTCGAACGGCTCGCTCGGTG 504 consensus_3813#1 GCGCGAGATTTGCGACAAATTT------------------------------------- 500 consensus_3813#2 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||