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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1410 fasta sequence
[ANTGCCAGAAAAGGTTTGCTGCAGAACAATGGGAGTAAAGGAACAAAAAGGCAAGCCCCCGGGGGCTTCTGTGCAACATTTACTTTTACCAAAACCTTAGGGAAGTTATTTGAAAATCATGATTTGATAGCGGAAACCATCGACGATAATGATATTTGTTCGCATTCTCCTTGTAATTTCAACGCTACTGCTGAAGAGAAGGAAACCACACATCCAAACTGCGCTTTGCCGTAGGAGCGGATTTTTTAAACAAATTTGTGTTGCGCATTTTCTTTTCTACCTTTGCTTTTGTGTAAATATACCCAGCTGCCATTATATATCCTGGAAAGCTCGCTTAACCCGTTACTACGCGTTACTACGTTCACGTTACGCTAACGAAGAGAGTTACGTAGGTTGGATCAAATGGTTCTACCCGTACGTTTCTTCGTTCGTATTTCGACAGGGGGTACAAGGGTGGGATAATGTAAACGACAAAAGACACATTTTCTAATCATTCAATTAATATTTCCTTCTTCGTGTTACCTGTTAGTGTTTTCTTTGTTGGTATTGTTTTCTTCTAAAGAAATTAAAAAAAAAACAGCAACCATCAAACGAATCGTTTGNTCTTTGCTTTGGTTGCTCGTTTAAGTAAGACTTTTCTATCATCTATTAAGCATTTGTTTTGGACTCTTCTAGATTAGTGTTGTGTAGTGTATGTTAATTGCGTTCTGCATTGCGCTGCTTTTTATGTTCAGTGTTCTATGTTGTGTTGTGCAAAAGGTTCCAGTATAGGTGTCCGTATATATTCGTCCTTTCTAAGGGTGAAACAATATTGTAGCAAGAATATTCTACATTAACTCCTCATATGGTAGTCCTTTACTTTTACCACTTATACTTATTATTTAATGCGTTCAATATACATCGAGTGTTATANNACGCATACAGTGGCGGGTTNTAGGGGGATCCCCTGACGATCACCCAGGATCCGTACTACCGTTAAACCCCGCCACTGCCTTACATNTACTGTTNCGCTCNGCTCAATAGTGGCACCTCNATTNACGTTCAGCTAGNAAGCCGTAAAACACCNGTACAGNAGTCCTACNGNAACGGGCACAACCGATCAATCATCCAATGTATACAACCTATCNCAATAATACTGCACANAGGTCTCATANCACGGCNANCTCCCAGCTGGATCCNCAGNNNNAGGCTCCAANCCCTCCTAGGACACCNACCANNTCCAATANCANTNCCCAACACAAAAACGGCACAACACAGCCACAAGCANACNACCGGACACCACGGGANACCCACNNGCAAATCACCACCGAGNCCGGACAACCACACACCATCCNNAGCCCAACAGCCAACNNCNCAACNCCGNCAACAGACGCACACCAGNCNCCAAACCCAACCACGACCACNCGCANN]
[+] EMBL BX620077 [ANTGCCAGAAAAGGTTTGCTGCAGAACAATGGGAGTAAAGGAACAAAAAGGCAAGCCCCCGGGGGCTTCTGTGCAACATTTACTTTTACCAAAACCTTAGGGAAGTTATTTGAAAATCATGATTTGATAGCGGAAACCATCGACGATAATGATATTTGTTCGCATTCTCCTTGTAATTTCAACGCTACTGCTGAAGAGAAGGAAACCACACATCCAAACTGCGCTTTGCCGTAGGAGCGGATTTTTTAAACAAATTTGTGTTGCGCATTTTCTTTTCTACCTTTGCTTTTGTGTAAATATACCCAGCTGCCATTATATATCCTGGAAAGCTCGCTTAACCCGTTACTACGCGTTACTACGTTCACGTTACGCTAACGAAGAGAGTTACGTAGGTTGGATCAAATGGTTCTACCCGTACGTTTCTTCGTTCGTATTTCGACAGGGGGTACAAGGGTGGGATAATGTAAACGACAAAAGACACATTTTCTAATCATTCAATTAATATTTCCTTCTTCGTGTTACCTGTTAGTGTTTTCTTTGTTGGTATTGTTTTCTTCTAAAGAAATTAAAAAAAAAACAGCAACCATCAAACGAATCGTTTGNTCTTTGCTTTGGTTGCTCGTTTAAGTAAGACTTTTCTATCATCTATTAAGCATTTGTTTTGGACT ]
[+] EMBL AL695538 [ CAAACGAATCGTTTGTTCTTTGCTTTGTTTGCTCGTTTAAGTAAGACTTTTCTATCATCTATTAAGCATTTGTTTTGGACTCTTCTAGATTAGTGTTGTGTAGTGTATGTTAATTGCGTTCTGCATTGCGCTGCTTTTTATGTTCAGTGTTCTATGTTGTGTTGTGCAAAAGGTTCCAGTATAGGTGTCCGTATATATTCGTCCTTTCTAAGGGTGAAACAATATTGTAGCAAGAATATTCTACATTAACTCCTCATATGGTAGTCCTTTACTTTTACCACTTATACTTATTATTTAATGCGTTCAATATACATCGAGTGTTATANNACGCATACAGTGGCGGGTTNTAGGGGGATCCCCTGACGATCACCCAGGATCCGTACTACCGTTAAACCCCGCCACTGCCTTACATNTACTGTTNCGCTCNGCTCAATAGTGGCACCTCNATTNACGTTCAGCTAGNAAGCCGTAAAACACCNGTACAGNAGTCCTACNGNAACGGGCACAACCGATCAATCATCCAATGTATACAACCTATCNCAATAATACTGCACANAGGTCTCATANCACGGCNANCTCCCAGCTGGATCCNCAGNNNNAGGCTCCAANCCCTCCTAGGACACCNACCANNTCCAATANCANTNCCCAACACAAAAACGGCACAACACAGCCACAAGCANACNACCGGACACCACGGGANACCCACNNGCAAATCACCACCGAGNCCGGACAACCACACACCATCCNNAGCCCAACAGCCAACNNCNCAACNCCGNCAACAGACGCACACCAGNCNCCAAACCCAACCACGACCACNCGCANN]
consensusID : consensus_3817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence
[GAATCCCCCCGAGGTTATGAAGTCGGTATTTAATCTAACAGAGAAATGGGAAATNAATCCACACCACAGTGTAGCAAACAGGCTGCAGGAACCAAATGGCAATCCATGAACATTGAACGAATTGGCAGCCTTCCCTTAGCTAAATAGAAAGAGAGAAAGTGGAAGGAAGTGAGCAAAACTATCCATCATCCTTGGCAGTCGGTGTAAGTAGTCAGGCCGGGGCTCATGCCAGGAACTTCCAGAGGGAAGATAGTTTGCAATGCAAACGGAANATGAAAAATTCCTGTCTGCCTATTTTATCGCCACCTTTTACAAAAGTTGGCTTCCTGTACCTGTAAAAAGTGGCACCCGTTCATCGTATATGATTGCCAGAAAAGGTTTGCTGCAGAACAATGGGAGTAAAGGAACAAACAAGGCAAGCCCCCGNGGGGCTTCTGTGCAACATTTACTTTTACCAAAACCTTAGGGGAAGTNATTTGAAAACTCATGCATTTGATAGCGGGAAACCATACGACGCATAAATGCATATTTGTATCGCATTCTCCTTTGTAATATTCAACGCTACTGCTGAANGAGAAGGAAACCACACATACAAACTGGCTTTGCGATANGAGACGGATTTTTAACCACACATTTATGTAGTTNGCGCATTATACTTTNCTACCTATNTGCTTTCTNTGNGTAAATATACCAGCTGCCACTNTATATCCTGAAAGCTCGCTTAACCGTTATACGCCGTNACATTAACGTACACGGTATACGCTAACGAAACAGAGTAACNTAACGTAN]
[+] EMBL AL694516 [GAATCCCCCCGAGGTTATGAAGTCGGTATTTAATCTAACAGAGAAATGGGAAATNAATCCACACCACAGTGTAGCAAACAGGCTGCAGGAACCAAATGGCAATCCATGAACATTGAACGAATTGGCAGCCTTCCCTTAGCTAAATAGAAAGAGAGAAAGTGGAAGGAAGTGAGCAAAACTATCCATCATCCTTGGCAGTCGGTGTAAGTAGTCAGGCCGGGGCTCATGCCAGGAACTTCCAGAGGGAAGATAGTTTGCAATGCAAACGGAANATGAAAAATTCCTGTCTGCCTATTTTATCGCCACCTTTTACAAAAGTTGGCTTCCTGTACCTGTAAAAAGTGGCACCCGTTCATCGTATATGATTGCCAGAAAAGGTTTGCTGCAGAACAATGGGAGTAAAGGAACAAACAAGGCAAGCCCCCGNGGGGCTTCTGTGCAACATTTACTTTTACCAAAACCTTAGGGGAAGTNATTTGAAAACTCATGCATTTGATAGCGGGAAACCATACGACGCATAAATGCATATTTGTATCGCATTCTCCTTTGTAATATTCAACGCTACTGCTGAANGAGAAGGAAACCACACATACAAACTGGCTTTGCGATANGAGACGGATTTTTAACCACACATTTATGTAGTTNGCGCATTATACTTTNCTACCTATNTGCTTTCTNTGNGTAAATATACCAGCTGCCACTNTATATCCTGAAAGCTCGCTTAACCGTTATACGCCGTNACATTAACGTACACGGTATACGCTAACGAAACAGAGTAACNTAACGTAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3817#0 ANTGCCAGAAAAGGTTTGCTGCAGAACAATGGGAGTAAAGGAACAAAAAGGCAAGCCCCC 60
consensus_3817#1 ------------------------------------------------------------
consensus_3817#0 GGGGGCTTCTGTGCAACATTTACTTTTACCAAAACCTTAGGGAAGTTATTTGAAAATCAT 120
consensus_3817#1 ------------------------------------------------------------
consensus_3817#0 GATTTGATAGCGGAAACCATCGACGATAATGATATTTGTTCGCATTCTCCTTGTAATTTC 180
consensus_3817#1 ------------------------------------------------------------
consensus_3817#0 AACGCTACTGCTGAAGAGAAGGAAACCACACATCCAAACTGCGCTTTGCCGTAGGAGCGG 240
consensus_3817#1 ------------------------------------------------------------
consensus_3817#0 ATTTTTTAAACAAATTTGTGTTGCGCATTTTCTTTTCTACCTTTGCTTTTGTGTAAATAT 300
consensus_3817#1 ------------------------------------------------------------
consensus_3817#0 ACCCAGCTGCCATTATATATCCTGGAAAGCTCGCTTAACCCGTTACTACGCGTTACTACG 360
consensus_3817#1 ------------------------------------------------------------
consensus_3817#0 TTCACGTTACGCTAACGAAGAGAGTTACGTAGGTTGGATCAAATGGTTCTACCCGTACGT 420
consensus_3817#1 ------------------------------------------------------------
consensus_3817#0 TTCTTCGTTCGTATTTCGACAGGGGGTACAAGGGTGGGATAATGTAAACGACAAAAGACA 480
consensus_3817#1 ------------------------------------------------------------
consensus_3817#0 CATTTTCTAATCATTCAATTAATATTTCCTTCTTCGTGTTACCTGTTAGTGTTTTCTTTG 540
consensus_3817#1 --------------------------------------GAATCCCCCCGAGGTTATGAAG 22
* * * * ** *
consensus_3817#0 TTGGTATTGTTTTCTTCTAAAGAAATTAAAAAAAAAACAGCAACCATCAAACGAATCGTT 600
consensus_3817#1 TCGGTATT-TAATCTAACAGAGAAATGGGAAATNAATCCACA-CCAC--AGTGTAGCAAA 78
* ****** * *** * ****** *** ** * ** *** * * * *
consensus_3817#0 TGNTCTTTGCTTTGGTTGCTCGTTTAAGTAAGACTTTTCTATCATCTATTAAGCATTTGT 660
consensus_3817#1 CAGGC--TGCAGGAACCAAATGGCAATCCATGAACATTGAACGAATTGGCAGCC--TTCC 134
* *** * * * ** ** * * * * * **
consensus_3817#0 TTTGGACTCTTCTAGATTAGTGTTGTGTAGTGTATGTTAATTGCGTTCTGCATTGCGCT- 719
consensus_3817#1 CTTAGCTAAATAGAAAGAGAGAAAGTGGAA-GGAAGTGAGCAAAACTATCCATCATCCTT 193
** * * * * *** * * * ** * * * *** **
consensus_3817#0 -GCTTTTTATGTTCAGTGTTCTATGTTGTGTTGTGCAAAAGGTTCCAGTATAGGTGTCCG 778
consensus_3817#1 GGCAGTCGGTGTAAGTAGTCAGGCCGGGGCTCATGCCAGGAACTTCCAGAGGGAAGATAG 253
** * *** ** * * *** * * * * * * *
consensus_3817#0 TATATATTCGTCCTTTCTAAGGGTGAAACAATATTGTAGCAAGAATATTCTACATTAACT 838
consensus_3817#1 TTTGCA---ATGCAAACGGAANATGAAAAATTCCTGTCT---GCCTATTTT--ATCGCCA 305
* * * * * * * ***** * * *** * **** * ** *
consensus_3817#0 CCTCATATGGTAGTCCTTTACTTTTACCACTTATACTTATTATTTAATGCGTTCAATATA 898
consensus_3817#1 CCTTTTACAAAAGTTGGCTTCCTGTACCTGTAAAAAGTGGCACC-----CGTTCATCGTA 360
*** ** *** * * * **** * * * * * ****** **
consensus_3817#0 CATCGAGTGTTATANNACGCATACAGTGGCGGGTTNTAGGGGGATCCCCTGACGATCACC 958
consensus_3817#1 TAT-GATTGCCAGAAAAGGTTTGC--TGCAGAACAATGGGAGTA------AAGGAACAAA 411
** ** ** * * * * * * ** * * ** * * * ** **
consensus_3817#0 CAGGATCCGTACTACCGTTAAACCCCGCCACTGCCTTACATNTACTGTTNCGCTCNGCTC 1018
consensus_3817#1 CAAGG--CAAGCCCCCGNGGGGCTTC-----TGTGCAACATTTACTTTTACCAAAACCTT 464
** * * * *** * * ** **** **** ** * **
consensus_3817#0 AATAGTGGCACCTCNATTNACGTTCAGCTAGNAAGCCGTAAAACAC-CNGTACAGNAGTC 1077
consensus_3817#1 AGGGGAAGTNATTTGAAAACTCATGCATTTGATAGCGGGAAACCATACGACGCATAAATG 524
* * * * * * * * *** * *** ** * ** * *
consensus_3817#0 C-TACNGNAACGGGCACAACCGATCAATCATCCAATGTATACAACCTATCNCAATAATAC 1136
consensus_3817#1 CATATTTGTATCGCATTCTCCTTTGTAATATTCAACGCTACTGCTGAANGAGAAGGAAAC 584
* ** * * ** * * ** *** * * ** * **
consensus_3817#0 TGCACANA-GGTCTCATANCACGGCNANCTCCCAGCTGGATCCNCAGNNNNAGGCTCCAA 1195
consensus_3817#1 CACACATACAAACTGGCTTTGCGATANG-----AGACGGATTTTTAACCACACATTTATG 639
**** * ** ** ** **** * * *
consensus_3817#0 NCCCTCCTAGGACACCNACCANNTCCAATANCANTNCCCAACACAAAAACGGCACAACAC 1255
consensus_3817#1 TAGTTNGCGCATTATACTTTNCTACCTATNTGCTTTCTNTGNGTAAATATACC------- 692
* * ** ** * * *** * *
consensus_3817#0 AGCCACAAGCANACNACCGGACACCACGGGANACCCACNNGCAAATCACCACCGAGNCCG 1315
consensus_3817#1 AGCTGCCACTNTATATCCTGAAAGCTCGCTTAACCGTTATACGCCGTNACATTAACGT-A 751
*** * * * ** ** * * ** *** * ** *
consensus_3817#0 GACAACCACACACCATCCNNAGCCCAACAGCCAACNNCNCAACNCCGNCAACAGACGCAC 1375
consensus_3817#1 CACGGT-ATACGCTAAC-GAAACAGAGTAACNTAACGTAN-------------------- 789
** * ** * * * * * * * * *
consensus_3817#0 ACCAGNCNCCAAACCCAACCACGACCACNCGCANN 1410
consensus_3817#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||