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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3821#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 784 fasta sequence
[GGCCGATATGACGGACTAGAGGTGGTGTCGCCGACGGAGTTCGAAATTATTATCTACCTCAATCAAATGGGCGTCCTCAACTTTGTGGACGACGGNACGCTGCCTGGGTGTGCGGTGCTGAAGCTTAGCGACGGTCGCAAACGCTCCATGTCGTTGTGGGTCGAGTTTATTACTGCTTCCGGGTATTTGTCCGCCCGAAAGATCCGGTCCCGCTTTCAGACACTAGTCGCGCAGGCCTGTGATAAGTGTTCGTACCGCGACTCGGTGAAGATGATTGCCGACACGACGGAGGTAAAACTGCGCATCCGCGAGCGTATTATCGTGCAGATCACGCCCGCCTTCAAGTGTGCAGGATTGTGGCCCCGTTCCGCGTCACACTGGCCCTTGCCCCAGATACCATGGCCTCATCCAAACATCGTATCAGAGGTGAAAACGGAAGGGTTCGACATGCTGTCAAAAGAGTGCATCGCGCTGCAAGGCAAAAACTCGGCGATGGAGGGTGATGCTTGGGTGCTAAGCTTTACCGAGGCCGAAAACAAACTGCTCCAAGGTGGCTGTCGGAGGCGGTGCCTCAGCATTCTGAAGACGCTGCGCGACCGGCACCTCGATCTGCCCGGCAACCCAGTCACATCGTACGTGATGAAGACACTGCTACTGTACGAGTGCGAAAAACATCCGCGCGAGATGGAGTGGGACGAGAACTGTATGGGCGACCGGATCAACGGGATCTTTCTGCAGCTCATCTCCTGCCTGCAGTGTCGCCGATGTCCTCATTACTTCCTGC]
[+] EMBL BX620223 [GGCCGATATGACGGACTAGAGGTGGTGTCGCCGACGGAGTTCGAAATTATTATCTACCTCAATCAAATGGGCGTCCTCAACTTTGTGGACGACGGNACGCTGCCTGGGTGTGCGGTGCTGAAGCTTAGCGACGGTCGCAAACGCTCCATGTCGTTGTGGGTCGAGTTTATTACTGCTTCCGGGTATTTGTCCGCCCGAAAGATCCGGTCCCGCTTTCAGACACTAGTCGCGCAGGCCTGTGATAAGTGTTCGTACCGCGACTCGGTGAAGATGATTGCCGACACGACGGAGGTAAAACTGCGCATCCGCGAGCGTATTATCGTGCAGATCACGCCCGCCTTCAAGTGTGCAGGATTGTGGCCCCGTTCCGCGTCACACTGGCCCTTGCCCCAGATACCATGGCCTCATCCAAACATCGTATCAGAGGTGAAAACGGAAGGGTTCGACATGCTGTCAAAAGAGTGCATCGCGCTGCAAGGCAAAAACTCGGCGATGGAGGGTGATGCTTGGGTGCTAAGCTTTACCGAGGCCGAAAACAAACTGCTCCAAGGTGGCTGTCGGAGGCGGTGCCTCAGCATTCTGAAGACGCTGCGCGACCGGCACCT ]
[+] EMBL BX618969 [ TCGACATGCTGTCAAAAGAGTGCATCGCGCTGCAAGGCAAAAACTCGGCGATGGAGGGTGATGCTTGGGTGCTAAGCTTTACCGAGGCCGAAAACAAACTGCTCCAAGGTGGCTGTCGGAGGCGGTGCCTCAGCATTCTGAAGACGCTGCGCGACCGGCACCTCGATCTGCCCGGCAACCCAGTCACATCGTACGTGATGAAGACACTGCTACTGTACGAGTGCGAAAAACATCCGCGCGAGATGGAGTGGGACGAGAACTGTATGGGCGACCGGATCAACGGGATCTTTCTGCAGCTCATCTCCTGCCTGCAGTGTCGCCGATGTCCTCATTACTTCCTGC]
consensusID : consensus_3821#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[AATCCCCCGAGGTTAGCGAGATGGAGTGGGACGAGAACTGTATGGGCGACCGGATCAACGGGATCTTTCTGCAGCTCATCTCCTGCCTGCAGGTGTCGCCGATGTCCTCATTACTTCCTGCCAAACATGGACCTTTTCAAGGGCAAGTCACCCGGTGCGCTCGAAAACGCCTCCAAGCAGGTCTGGCGGTTGACCACGAATCATGCTCACCAACTCACGCTGTCTCGAGGAGCTGTAAAGAAGCCGCTTCGAGGGCGTTGCACATCGTAAATACAACATCGTAGGCTAAGACCGAACGTTCTCTAGAACATAAGGGGGATGGGGGCGAGTATTTACTCGCAAGAGCTGGAGAGAGGGTTTATCAAGCAGGTGAACGCGCCTCACCTACCCAGAGGGCATTAATTGTGGGGCAAGCAAGCACTATTCTAACTCTAGCGAGGTACTAAATTATTATGCACGTATACTGTATACACC]
[+] EMBL AL694529 [AATCCCCCGAGGTTAGCGAGATGGAGTGGGACGAGAACTGTATGGGCGACCGGATCAACGGGATCTTTCTGCAGCTCATCTCCTGCCTGCAGGTGTCGCCGATGTCCTCATTACTTCCTGCCAAACATGGACCTTTTCAAGGGCAAGTCACCCGGTGCGCTCGAAAACGCCTCCAAGCAGGTCTGGCGGTTGACCACGAATCATGCTCACCAACTCACGCTGTCTCGAGGAGCTGTAAAGAAGCCGCTTCGAGGGCGTTGCACATCGTAAATACAACATCGTAGGCTAAGACCGAACGTTCTCTAGAACATAAGGGGGATGGGGGCGAGTATTTACTCGCAAGAGCTGGAGAGAGGGTTTATCAAGCAGGTGAACGCGCCTCACCTACCCAGAGGGCATTAATTGTGGGGCAAGCAAGCACTATTCTAACTCTAGCGAGGTACTAAATTATTATGCACGTATACTGTATACACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3821#0 GGCCGATATGACGGACTAGAGGTGGTGTCGCCGACGGAGTTCGAAATTATTATCTACCTC 60
consensus_3821#1 -------------------------------------AATCCCCCGAGGTTAGCGA---- 19
* * * *** * *
consensus_3821#0 AATCAAATGGGCGTCCTCAACTTTGTGGACGACGGNACGCTGCCTGGGTGTGCGGTGCTG 120
consensus_3821#1 GATGGAGTGGG--ACGAGAACTGTATGGGCGACCGGAT--CAACGGGATCT----TTCTG 71
** * **** * **** * *** **** * * * ** * * * ***
consensus_3821#0 AAGCTTAGCGACGGTC-GCAAACGCTCCATGTCGTTGTGGGTCGAGTTTATTACTGCTTC 179
consensus_3821#1 CAGCTCATCTCCTGCCTGCAGGTGTC----GCCGATGTCCTCATTACTTCCTGCCAAACA 127
**** * * * * * *** * * ** *** ** * *
consensus_3821#0 CGGGTATTTGTCCGCCCGAAAGATCCGGTCCCGCTTTCAGACACTAGTCGCGCAGGCCTG 239
consensus_3821#1 TGGACCTTTTCAAGGGCAAGTCACCCGGTGC-GCTCGAAAACGCCT-CCAAGCAGGTCTG 185
** *** * * * * ***** * *** * ** * * ***** ***
consensus_3821#0 TGATAAGTGTTCGTACCGCGACTCGGTGAAGATGATTGCCGACACGACGGAGGTAAAACT 299
consensus_3821#1 ------GCGGTTG-ACCACGAATC-------ATGCTCACCAACTC-----ACGCTGTCTC 226
* * * * *** *** ** *** * ** ** * * *
consensus_3821#0 GCGCATCCGCGAGCGTATTATCGTGCAGATCACGCCCGCCTTCAAGTGTGCAGGATTGTG 359
consensus_3821#1 GAGGAGCTGTAAAGAAGCCGCTTCGAGGGCGTTGCACATCGTAAA---TACAACATCGTA 283
* * * * * * * * ** * * * ** * ** ** **
consensus_3821#0 GCCCCGTTCCGCGTCACACTGGCCCTTGCCCCAGATACCATGGCCTCATCCAAACATCGT 419
consensus_3821#1 GGCTAAGACCG---AACGTT--CTCTAGA---ACATAAGGGGGATGGGGGCGAGTATTTA 335
* * *** ** * * ** * * *** ** * * **
consensus_3821#0 ATCAGAGGTGAAAACGGAAGGGTTCGACATGCTGTCAAAAGAGTG-CATCGCGCTGCAAG 478
consensus_3821#1 CTCGCAAGAGCTGGAGAGAGGGTTTATCAAGCAGGTGAACGCGCCTCACCTACCCAGAGG 395
** * * * * ****** ** ** * ** * * ** * * * *
consensus_3821#0 GCAAAAACTCGGCGATGGAGGGTGATGCTTGGGTGCTAAGCTTTACCGAGGCCGAAAACA 538
consensus_3821#1 GCATTAATT--GTGGGGCAAGCAAGCACT---ATTCTAA-CTCTAGCGAGGTACTAAATT 449
*** ** * * * * * * ** * **** ** ** ***** ***
consensus_3821#0 AACTGCTCCAAGGTGGCTGTCGGAGGCGGTGCCTCAGCATTCTGAAGACGCTGCGCGACC 598
consensus_3821#1 A--TTATGCACGTATACTGTATACACC--------------------------------- 474
* * * ** * **** *
consensus_3821#0 GGCACCTCGATCTGCCCGGCAACCCAGTCACATCGTACGTGATGAAGACACTGCTACTGT 658
consensus_3821#1 ------------------------------------------------------------
consensus_3821#0 ACGAGTGCGAAAAACATCCGCGCGAGATGGAGTGGGACGAGAACTGTATGGGCGACCGGA 718
consensus_3821#1 ------------------------------------------------------------
consensus_3821#0 TCAACGGGATCTTTCTGCAGCTCATCTCCTGCCTGCAGTGTCGCCGATGTCCTCATTACT 778
consensus_3821#1 ------------------------------------------------------------
consensus_3821#0 TCCTGC 784
consensus_3821#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||