These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence [CCGGACGTTGAGGTGCTAGAGCAAAGCTGAAGCATAATAATTGCAAAAAAAAGAAAAGAAAAACAATATAAAGAAGAAAAACATAATAATAGTGAACGAAAAACACTACAACCCACGCCAGCAAAGCGACAATGTGGAAAAAGCCCACAGTTAGTGTATTTTTGTTTTAAAATCGTTCCTCTTTCTCTATCATTGCAATGTTGCAGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTTGGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAGAAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCCCGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCAAATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGAAAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAAACGGAGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGTATTATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATGCTG] [+] EMBL BM619904 [CCGGACGTTGAGGTGCTAGAGCAAAGCTGAAGCATAATAATTGCAAAAAAAAGAAAAGAAAAACAATATAAAGAAGAAAAACATAATAATAGTGAACGAAAAACACTACAACCCACGCCAGCAAAGCGACAATGTGGAAAAAGCCCACAGTTAGTGTATTTTTGTTTTAAAATCGTTCCTCTTTCTCTATCATTGCAATGTTGCAGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTTGGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAGAAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCCCGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCAAATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGAAAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAAACGGAGAAAGCAAAACA ] [+] EMBL BM603518 [ ccgGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTTGGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAGAAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCCCGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCAAATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGAAAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAAACGGAGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGTATTATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATGCTG] consensusID : consensus_3839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [GCCGCCAGGTGGTCAGCAAGTAGCATGTATTATTAGTAGCAGAATAAAACACAATAAACAAAACAAATGACAAAAATAACAAAGCGAAAAACGGGGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGCATTATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATGCTGAAAGAAAGAAAAAAAAACGCAGCCCGCAGTAGATAAGAAAATAGGCAAATTTTCAAAGAAAAACCAACCCCC] [+] EMBL BX620709 [GCCGCCAGGTGGTCAGCAAGTAGCATGTATTATTAGTAGCAGAATAAAACACAATAAACAAAACAAATGACAAAAATAACAAAGCGAAAAACGGGGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGCATTATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATGCTGAAAGAAAGAAAAAAAAACGCAGCCCGCAGTAGATAAGAAAATAGGCAAATTTTCAAAGAAAAACCAACCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3839#0 CCGGACGTTGAGGTGCTAGAGCAAAGCTGAAGCATAATAATTGCAAAAAAAAGAAAAGAA 60 consensus_3839#1 ------------------------------------------------------------ consensus_3839#0 AAACAATATAAAGAAGAAAAACATAATAATAGTGAACGAAAAACACTACAACCCACGCCA 120 consensus_3839#1 ------------------------------------------------------------ consensus_3839#0 GCAAAGCGACAATGTGGAAAAAGCCCACAGTTAGTGTATTTTTGTTTTAAAATCGTTCCT 180 consensus_3839#1 ------------------------------------------------------------ consensus_3839#0 CTTTCTCTATCATTGCAATGTTGCAGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTT 240 consensus_3839#1 ------------------------------------------------------------ consensus_3839#0 GGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAG 300 consensus_3839#1 ------------------------------------------------------------ consensus_3839#0 AAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCC 360 consensus_3839#1 ------------------------------------------------------------ consensus_3839#0 CGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCA 420 consensus_3839#1 ------------------------------------------------------------ consensus_3839#0 AATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGA 480 consensus_3839#1 --------------------------GCCGCCAGGTGGTCAGCAAGTA-GCATGTATTAT 33 * * * * * ** * * ** consensus_3839#0 AAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAA 540 consensus_3839#1 TAGTAGCAGAATAAAACACAATAAACA---AAACAAATGACAAAAATAACAAAGCGAAAA 90 ** * ** ** ** * ** ***** ****************************** consensus_3839#0 ACGGAGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGTATT 600 consensus_3839#1 ACGGGGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGCATT 150 **** *************************************************** *** consensus_3839#0 ATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAAAACACACACACACACAGTA 660 consensus_3839#1 ATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAA--ACACACACACACACAGTA 208 **************************************** ****************** consensus_3839#0 GGAAAATGCATAAAATAAAATCATAGAAAATGCTG------------------------- 695 consensus_3839#1 GGAAAATGCATAAAATAAAATCATAGAAAATGCTGAAAGAAAGAAAAAAAAACGCAGCCC 268 *********************************** consensus_3839#0 ----------------------------------------------- consensus_3839#1 GCAGTAGATAAGAAAATAGGCAAATTTTCAAAGAAAAACCAACCCCC 315 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||