cluster # 3845

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Anopheles gambiae
cluster # 3845 cluster # 3845 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3845#0 length = 665 sequences # 2

consensus_3845#1 length = 621 sequences # 1

consensusID : consensus_3845#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [CCGGTCCGTTCGGTCAGCCACTTTGCTTCGTGGTGGAAGAACCGCCGCCCGAGGAGATGCAATCGGGCAAAAAAGATGGCAAGCGAAAGAAGTGAACGTCACGATCGGACGGTGTATAGGTATAGGCGGCCTGACAGAACACTCACGTGTTGAACGATGATTCTTACTCTTAAGCAAGCAGATAAAGGACAATTTCACCGACACAAGCTTAGCATAAGGTTTTGTTTTGGCAACATTG----CCCCCCCTTGCCAGTTTGAGACACGCGCCGCGGCACCCCTGGAAGATAAACGCATCGAAAGGAGATGATACCTTTTTCTTTTATTGTATGACTTGCTATACACGCCTCCCGTGTGCTTCACGGCACACGAGTTTGCGCATGCAAACACACGCTCTGCGAGATGCCTGTACTGTACGAATTAATATGGTTGCAGTTGCCCTGTTTTGTTATCCTCTCCGTTTGAATAAAAATTGTTAATTTGGTGCATTGCGTTGCAATGTTCGATTACGTAGCATCATGTGTGTGTGTGTGTGTGTAAAGCAAGCGACAAACCCTGATCGGATTTTGATTTTAAATCCTAAACCGAGCAGAAGCAGTTTTAGTTATTGTTCCTTGGACACGTTGGATTAGGACACTAGTTAGTTGCGACAGTTACCATTTTAGCTTT]

[+] EMBL BM617276             [CCGGTCCGTTCGGTCAGCCACTTTGCTTCGTGGTGGAAGAACCGCCGCCCGAGGAGATGCAATCGGGCAAAAAAGATGGCAAGCGAAAGAAGTGAACGTCACGATCGGACGGTGTATAGGTATAGGCGGCCTGACAGAACACTCACGTGTTGAACGATGATTCTTACTCTTAAGCAAGCAGATAAAGGACAATTTCACCGACACAAGCTTAGCATAAGGTTTTGTTTTGGCAACATTG    CCCCCCCTTGCCAGTTTGAGACACGCGCCGCGGCACCCCTGGAAGATAAACGCATCGAAAGGAGATGATACCTTTTTCTTTTATTGTATGACTTGCTATACACGCCTCCCGTGTGCTTCACGGCACACGAGTTTGCGCATGCAAACACACGCTCTGCGAGATGCCTGTACTGTACGAATTAATATGGTTGCAGTTGCCCTGTTTTGTTATCCTCTCCGTTTGAATAAAAATTGTTAATTTGGTGCATTGCGTTGCAATGTTCGATTACGTAGCATCATGTGTGTGTGTGTGTGTGTAAAGCAAGCGACAAACCCTGATCGGATTTTGATTTTAAATCCTAAACCGAGCAGAAGCAGTTTTAGTTATTGTTCCTTGGACACGTTGGATTAGGACACTAGTTAGTTGCGACAGTTACCATTTTAGCTTT]
[+] EMBL BM639143             [CCGGTCCGTTCGGTCAGCCACTTTGCTTCGTGGTGGAAGAACCGCCGCCCGAGGAGATGCAATCGGGCAAAAAAGATGGCAAGCGAAAGAAGTGAACGTCACGATCGGACGGTGTATAGGTATAGGCGGCCTGACAGAACACTCACGTGTTGAACGATGATTCTTACTCTTAAGCAAGCAGATAAAGGACAATTTCACCGACACAAGCTTAGCATAAGGTTTTGTTTTGGCAACATTGCCCCCCCCCCCTTGCCAGTTTGAGACACGCGCCGCGGCACCCCTGGAAGATAAACACATCGAAAGGAGATGATACCTTTTTCTTTTATTGTATGACTTGCTATACACGCCTCCCATGTGCTTCACGGCACACGAGTTTGCGCATGCAAACACACGCTCTGCGAGATGCCTGTACTGTACGAATTAATATGGTTGCAGTTGCCCTGTTTTGTTATCCTCTCCGTTTGAATAAAAATTGTTAATTTGGTGCATTGCGTTGCAATGTTCGATTACGTAGCATCA      TGTGTGTGTGTGTAAAGCAAGCGACAAACCCTGATCGGATTTTGATTTTAAATCCTAAAC                                                                                    ]




>consensus_3845#0
CCGGTCCGTTCGGTCAGCCACTTTGCTTCGTGGTGGAAGAACCGCCGCCCGAGGAGATGC
AATCGGGCAAAAAAGATGGCAAGCGAAAGAAGTGAACGTCACGATCGGACGGTGTATAGG
TATAGGCGGCCTGACAGAACACTCACGTGTTGAACGATGATTCTTACTCTTAAGCAAGCA
GATAAAGGACAATTTCACCGACACAAGCTTAGCATAAGGTTTTGTTTTGGCAACATTGCC
CCCCCTTGCCAGTTTGAGACACGCGCCGCGGCACCCCTGGAAGATAAACGCATCGAAAGG
AGATGATACCTTTTTCTTTTATTGTATGACTTGCTATACACGCCTCCCGTGTGCTTCACG
GCACACGAGTTTGCGCATGCAAACACACGCTCTGCGAGATGCCTGTACTGTACGAATTAA
TATGGTTGCAGTTGCCCTGTTTTGTTATCCTCTCCGTTTGAATAAAAATTGTTAATTTGG
TGCATTGCGTTGCAATGTTCGATTACGTAGCATCATGTGTGTGTGTGTGTGTGTAAAGCA
AGCGACAAACCCTGATCGGATTTTGATTTTAAATCCTAAACCGAGCAGAAGCAGTTTTAG
TTATTGTTCCTTGGACACGTTGGATTAGGACACTAGTTAGTTGCGACAGTTACCATTTTA
GCTTT

consensusID : consensus_3845#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCCGAGGTTTAGCACAAATTCGCTTCGTATGGCTACCGATAATCACAATCTACAGGAGTACACCTACAAAAAGATCACACCGTGTCGACGTTTGCTCGTCAAGTGCTACGAGGACACATCCCTGCACAGGGCTCTACGGGTGTCCGTATATGCAAGGTGAACGTGCACGCCGANGTGTGCTTCGCANGCGTGCCAAAGCTGTCAGGTAAAGCAGTAAGCTGGTCCGGGCGCGCAGCAAGAGCACCGTCGGAAAGTCGAGAACCGTGCCACCGAGGTCGAGGAAGAAACGGAAGAAGAGTGACATTAGTGATTTCGACGCGTCCGTTCGTGTCAGCCACTTTGCTTCGTGGCTGGAAGAACCGCCGCCCGATGGCATGATGCACACTCGGTGCACAAAAACGAGTGGCAAACGAACACGAAGATGAACGGTCACGATCGGACGGTGGTACTAGGGTATAGGCGTGCTCTGTACAGAATCACCTCACGTGCTTGACACCGACTGAACTTCCTTTAGCGTCTCTACAGCCAGAGGCAGAGTACAGACGGAACAAGTATATCACCCGGACCACCACATGCCTCTACGCCACTAAGGCTATCGGGTGANATTGGCCCAACATTGGT]

[+] EMBL AL694869             [CCCGAGGTTTAGCACAAATTCGCTTCGTATGGCTACCGATAATCACAATCTACAGGAGTACACCTACAAAAAGATCACACCGTGTCGACGTTTGCTCGTCAAGTGCTACGAGGACACATCCCTGCACAGGGCTCTACGGGTGTCCGTATATGCAAGGTGAACGTGCACGCCGANGTGTGCTTCGCANGCGTGCCAAAGCTGTCAGGTAAAGCAGTAAGCTGGTCCGGGCGCGCAGCAAGAGCACCGTCGGAAAGTCGAGAACCGTGCCACCGAGGTCGAGGAAGAAACGGAAGAAGAGTGACATTAGTGATTTCGACGCGTCCGTTCGTGTCAGCCACTTTGCTTCGTGGCTGGAAGAACCGCCGCCCGATGGCATGATGCACACTCGGTGCACAAAAACGAGTGGCAAACGAACACGAAGATGAACGGTCACGATCGGACGGTGGTACTAGGGTATAGGCGTGCTCTGTACAGAATCACCTCACGTGCTTGACACCGACTGAACTTCCTTTAGCGTCTCTACAGCCAGAGGCAGAGTACAGACGGAACAAGTATATCACCCGGACCACCACATGCCTCTACGCCACTAAGGCTATCGGGTGANATTGGCCCAACATTGGT]




>consensus_3845#1
CCCGAGGTTTAGCACAAATTCGCTTCGTATGGCTACCGATAATCACAATCTACAGGAGTA
CACCTACAAAAAGATCACACCGTGTCGACGTTTGCTCGTCAAGTGCTACGAGGACACATC
CCTGCACAGGGCTCTACGGGTGTCCGTATATGCAAGGTGAACGTGCACGCCGANGTGTGC
TTCGCANGCGTGCCAAAGCTGTCAGGTAAAGCAGTAAGCTGGTCCGGGCGCGCAGCAAGA
GCACCGTCGGAAAGTCGAGAACCGTGCCACCGAGGTCGAGGAAGAAACGGAAGAAGAGTG
ACATTAGTGATTTCGACGCGTCCGTTCGTGTCAGCCACTTTGCTTCGTGGCTGGAAGAAC
CGCCGCCCGATGGCATGATGCACACTCGGTGCACAAAAACGAGTGGCAAACGAACACGAA
GATGAACGGTCACGATCGGACGGTGGTACTAGGGTATAGGCGTGCTCTGTACAGAATCAC
CTCACGTGCTTGACACCGACTGAACTTCCTTTAGCGTCTCTACAGCCAGAGGCAGAGTAC
AGACGGAACAAGTATATCACCCGGACCACCACATGCCTCTACGCCACTAAGGCTATCGGG
TGANATTGGCCCAACATTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3845#0      CCGGTCCGTTCGGTCAG--CCACTTTGCTTCGTGGTGGAAGAACCGCCGCCCGAGGAGAT 58
consensus_3845#1      CCCGAGGTTTAGCACAAATTCGCTTCGTATGGCTACCGAT-AATCACAATCTACAGGAGT 59
                      ** *    ** *  **    * *** *  * *     **  ** * *   *    *   *

consensus_3845#0      GCAATCGGGCAAAAAAGATGGCAAGCGAAAGAAGTGAACGTCA--CGATCGGACGGTGTA 116
consensus_3845#1      ACACCTACAAAAAGATCACACCGTGTCGACGTT-TGCTCGTCAAGTGCTACGAGGACACA 118
                       **       *** *  *   *  *   * *   **  *****   * *  ** *    *

consensus_3845#0      TAGGTATAGGCGGCCTGACAGAACACTCACGTGTTGAACGATGATTCTTACTCTTAAGCA 176
consensus_3845#1      TCCCTGCACAGGGCTCTACGGG-TGTCCGTATATGCAAGGTGAACGTGCACGCCGANGTG 177
                      *   *  *   ***   ** *      *   * *  ** *   *     ** *  * *  

consensus_3845#0      AGC---AGATAAAGGACAATTTCACCGACACAAGCTTAGCATAAGGTTTTGTTTTGGCAA 233
consensus_3845#1      TGCTTCGCANGCGTGCCAAAGCTGTCAGGTAAAGC--AGTAAGCTGGTCCGGGCGCGCAG 235
                       **     *     * ***      *     ****  ** *    * *  *     *** 

consensus_3845#0      CATTGCCCCCCCTTGCCAGTTTGAGACACGCGCCGCGGCACCCCTGGAAGATAAACGCAT 293
consensus_3845#1      CAA-GAGCACCGTCGGAAAGTCGAGAACCGTGCCACCGAGGTCGAGGAAGA--AACG--- 289
                      **  *  * ** * *  *  * ****  ** *** * *    *  ******  ****   

consensus_3845#0      CGAAAGGAGATGATACCTTTTTCTTTTATTGTATGACTTGCTATACACGCCTCCCG-TGT 352
consensus_3845#1      -GAAGAAGAGTGACAT-TAGTGATTTCGACGCGT------CCGTTCGTGTCAGCCACTTT 341
                       ***      *** *  *  *  ***    *  *      *  * *  * *  **  * *

consensus_3845#0      GCTTCACGGC-ACACGAGTTTGCGCATGCAAACACACGCTCTGCGAGATGCCTGTACTGT 411
consensus_3845#1      GCTTCGTGGCTGGAAGAACCGCCGCCCGATGGCATGATGCACACTCGGTGCACAAAAACG 401
                      *****  ***   * **     ***  *    **         *  * ***    *    

consensus_3845#0      ACGAATTAATATGGTTGCAGTTGCCCTGTTTTGTT--ATCCTCTCCGTTTGAATAAAAAT 469
consensus_3845#1      AGTGGCAAACGAACACGAAGATGAACGGTCACGATCGGACGGTGGTACTAGGGTATAGGC 461
                      *      **       * ** **  * **   * *    *        * *  ** *   

consensus_3845#0      TGTTAATTTGGTGCATTGCGTTGCAATGTTCGATTACGTAGCATCATGTGTGTGTGTGTG 529
consensus_3845#1      GTGCTCTGTACAGAATCACCTCACG-TGCTTGACACCG----ACTGAACTTCCTTTAGCG 516
                            * *   * **  * *  *  ** * **   **    *       *   *  * *

consensus_3845#0      TGTGTAAAGCAAGCGACAAACCCTGATCGGATTTTGATTTTAAATCCTAAACCGAGCAGA 589
consensus_3845#1      TCTCTACAGCCAGAGGCAGAGTACAGACGGAA--CAAGTATATCACCCGGACC-ACCACA 573
                      * * ** *** ** * ** *       ****     * * **   **   *** * ** *

consensus_3845#0      AGCAGTTTTA--GTTATTGTTCCTTGGACACGTTGGATTAGGACACTAGTTAGTTGCGAC 647
consensus_3845#1      TGCCTCTACGCCACTAAGGCTATCGGGTGANATTGGCCCA--ACATTGGT---------- 621
                       **   *       **  * *    **  *  ****   *  *** * **          

consensus_3845#0      AGTTACCATTTTAGCTTT 665
consensus_3845#1      ------------------