These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 802 fasta sequence [CTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTTGGAAACATTGCTCTGCACATTTTCTCCACCAAGGCGAGAGAACAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAGAGTACAATAAACCGAGCGAAGAATTGGTTCAGCTGTTCGAAAAACACACCATCTATTTGGACGATTTGAAACCGCTCAAAAAAGAAGGTGAAAGTGGAAAGGTGTAATAGTTATTTAAAATAAAATTTGNTGTAGCATACAA] [+] EMBL BX622645 [CTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTTGGAAACATTGCTCTGCACATTTTCTCCACCAAGGCGAGAGAACAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAGAGTACAATAAACCGAGCGAAGAATTGGTTCAGCTGTTCGAAAAACACACCATCTATTTGGACGATTTGAAACCGCTCAAAAAAGAAGGTGAAAGTGGAAAGGTGTAATAGTTATTTAAAATAAAATTTGNTGTAGCATACAA] [+] EMBL BX623778 [ TATGGCCAACGCTATACGAAGATCCATACCGAAGTTTAATCGAGCATTAGTATTACCTGCATTCCGATTATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAGACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCACCGGTAATTCTAGACGTGGACGAGGAACGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGTATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTAGGAAACATTGCTCTGCACATTTTCTCCACCAAGGCGAGAGAACAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAGAGTACAATAAGCCGAGCGAAGAATTGGNTCAGCTGTTCNAAAAACACACCATCTATTTGGACGATTTGAAACC ] consensusID : consensus_3849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [GACCCACGCGTCCGCTCTTACCAACGCCTGTACTGCTATTTGGTGTTAACTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTTGGTAATGTGGAATATGCTGTCGAAACGCTTTATAGTTATACTCACCGGAGTTCCA] [+] EMBL BM602953 [GACCCACGCGTCCGCTCTTACCAACGCCTGTACTGCTATTTGGTGTTAACTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTTGGTAATGTGGAATATGCTGTCGAAACGCTTTATAGTTATACTCACCGGAGTTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3849#0 -------------------------------------------------CTATGGCCAAC 11 consensus_3849#1 GACCCACGCGTCCGCTCTTACCAACGCCTGTACTGCTATTTGGTGTTAACTATGGCCAAC 60 *********** consensus_3849#0 GCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCA 71 consensus_3849#1 GCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCA 120 ************************************************************ consensus_3849#0 TTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGC 131 consensus_3849#1 TTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGC 180 ************************************************************ consensus_3849#0 AAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGAT 191 consensus_3849#1 AAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGAT 240 ************************************************************ consensus_3849#0 ACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTA 251 consensus_3849#1 ACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTA 300 ************************************************************ consensus_3849#0 CAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGA 311 consensus_3849#1 CAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGA 360 ************************************************************ consensus_3849#0 GGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCT 371 consensus_3849#1 GGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCT 420 ************************************************************ consensus_3849#0 ATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATC 431 consensus_3849#1 ATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATC 480 ************************************************************ consensus_3849#0 GTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTC 491 consensus_3849#1 GTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTC 540 ************************************************************ consensus_3849#0 AAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGAC 551 consensus_3849#1 AAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGAC 600 ************************************************************ consensus_3849#0 TGGATGGCGCTGGATCTTGGAAACATTGCTCTGCACATTTTCTCCACCAAGGCGAGAGAA 611 consensus_3849#1 TGGATGGCGCTGGATCTTGGTAATGT-----GGAATATGCTGTCGA--AACGCTTTATAG 653 ******************** ** * * * ** * ** * ** ** * * consensus_3849#0 CAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAGAGTACAATAAA 671 consensus_3849#1 TTATACTCACCGGAGTTCCA---------------------------------------- 673 **** * ***** * consensus_3849#0 CCGAGCGAAGAATTGGTTCAGCTGTTCGAAAAACACACCATCTATTTGGACGATTTGAAA 731 consensus_3849#1 ------------------------------------------------------------ consensus_3849#0 CCGCTCAAAAAAGAAGGTGAAAGTGGAAAGGTGTAATAGTTATTTAAAATAAAATTTGNT 791 consensus_3849#1 ------------------------------------------------------------ consensus_3849#0 GTAGCATACAA 802 consensus_3849#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||