cluster # 385

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Anopheles gambiae
cluster # 385 cluster # 385 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_385#0 length = 909 sequences # 1

consensus_385#1 length = 563 sequences # 1

consensusID : consensus_385#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 909
fasta sequence

                              [TGGTGGTTTATTGGCTACTGGATTACTGTCGAGTCTTCGCTGGTTGAGGATCATCGTCACAGCAATCGTGTTGTCTCCCGCATCGTCTGTCAGTGTATCTCATTAACTGTGTTTGTGTTTGAATCTCCAATCTCCACTAATCATCATGGATTTCTATTACCTACCCGGATCTGCCCCGTGCCGTGCCGTCCAGATGACGGCGGCCGCCGTTGGGTTGAGCTGAACCTGAAGCTCACCGACCTGATGAAGGGCGAGCACATGAAGCCGGAGTTCCTGAAGATTAACCCACAACACTGCATTCCAACGCTGGTCGACAATGGATTCGCCCTGTGGGAGTCCCGCGCTATCTGTACTTATCTGGCGGAGAAGTACGGCAAGGACGACAAGCTGTACCCCAAGGACCCGCAGAAGCGTGCCGTAGTAAACCAGCGAATGTACTTCGACATGGGCACTCTATACCAGCGCTTCGCAGACTATTACTATCCTCAAATCTTCGCCAAGCAGCCGGCCAATCCAGAAAATGAACAGAAGATGAAGGATGCAGTTGACTTTCTGAACACCTTCCTGGACGGGCACAAGTACGTGGCAGGTGATAGTCTCACGATTGCCGACCTGTCCATCTTGGCCACAATCTCGACGTACGATGTAGCCGGGTTCGACTTGGCCAAGTACCAACACGTCGCTGCGTGGTACGAAAACATTCGCAAGGAAGCGCCCGGCGCCGCGATTAACCAGGCTGGCATTGAGGAGTTCAAGAAGTACTTTGAGAAGTAAACCGGTTCAACGCTTGTTAAGTTGGTGACATCTACGGGTTGGAGTGTTGTTGTTTTAACATGTATTTACAATAAAAATGAAAAGTCTGTCTGTTTGAAAAAAAAAAAAAAAAAACAAAAAAAAAGGCCACATGTG]

[+] EMBL CNS09QRH             [TGGTGGTTTATTGGCTACTGGATTACTGTCGAGTCTTCGCTGGTTGAGGATCATCGTCACAGCAATCGTGTTGTCTCCCGCATCGTCTGTCAGTGTATCTCATTAACTGTGTTTGTGTTTGAATCTCCAATCTCCACTAATCATCATGGATTTCTATTACCTACCCGGATCTGCCCCGTGCCGTGCCGTCCAGATGACGGCGGCCGCCGTTGGGTTGAGCTGAACCTGAAGCTCACCGACCTGATGAAGGGCGAGCACATGAAGCCGGAGTTCCTGAAGATTAACCCACAACACTGCATTCCAACGCTGGTCGACAATGGATTCGCCCTGTGGGAGTCCCGCGCTATCTGTACTTATCTGGCGGAGAAGTACGGCAAGGACGACAAGCTGTACCCCAAGGACCCGCAGAAGCGTGCCGTAGTAAACCAGCGAATGTACTTCGACATGGGCACTCTATACCAGCGCTTCGCAGACTATTACTATCCTCAAATCTTCGCCAAGCAGCCGGCCAATCCAGAAAATGAACAGAAGATGAAGGATGCAGTTGACTTTCTGAACACCTTCCTGGACGGGCACAAGTACGTGGCAGGTGATAGTCTCACGATTGCCGACCTGTCCATCTTGGCCACAATCTCGACGTACGATGTAGCCGGGTTCGACTTGGCCAAGTACCAACACGTCGCTGCGTGGTACGAAAACATTCGCAAGGAAGCGCCCGGCGCCGCGATTAACCAGGCTGGCATTGAGGAGTTCAAGAAGTACTTTGAGAAGTAAACCGGTTCAACGCTTGTTAAGTTGGTGACATCTACGGGTTGGAGTGTTGTTGTTTTAACATGTATTTACAATAAAAATGAAAAGTCTGTCTGTTTGAAAAAAAAAAAAAAAAAACAAAAAAAAAGGCCACATGTG]




>consensus_385#0
TGGTGGTTTATTGGCTACTGGATTACTGTCGAGTCTTCGCTGGTTGAGGATCATCGTCAC
AGCAATCGTGTTGTCTCCCGCATCGTCTGTCAGTGTATCTCATTAACTGTGTTTGTGTTT
GAATCTCCAATCTCCACTAATCATCATGGATTTCTATTACCTACCCGGATCTGCCCCGTG
CCGTGCCGTCCAGATGACGGCGGCCGCCGTTGGGTTGAGCTGAACCTGAAGCTCACCGAC
CTGATGAAGGGCGAGCACATGAAGCCGGAGTTCCTGAAGATTAACCCACAACACTGCATT
CCAACGCTGGTCGACAATGGATTCGCCCTGTGGGAGTCCCGCGCTATCTGTACTTATCTG
GCGGAGAAGTACGGCAAGGACGACAAGCTGTACCCCAAGGACCCGCAGAAGCGTGCCGTA
GTAAACCAGCGAATGTACTTCGACATGGGCACTCTATACCAGCGCTTCGCAGACTATTAC
TATCCTCAAATCTTCGCCAAGCAGCCGGCCAATCCAGAAAATGAACAGAAGATGAAGGAT
GCAGTTGACTTTCTGAACACCTTCCTGGACGGGCACAAGTACGTGGCAGGTGATAGTCTC
ACGATTGCCGACCTGTCCATCTTGGCCACAATCTCGACGTACGATGTAGCCGGGTTCGAC
TTGGCCAAGTACCAACACGTCGCTGCGTGGTACGAAAACATTCGCAAGGAAGCGCCCGGC
GCCGCGATTAACCAGGCTGGCATTGAGGAGTTCAAGAAGTACTTTGAGAAGTAAACCGGT
TCAACGCTTGTTAAGTTGGTGACATCTACGGGTTGGAGTGTTGTTGTTTTAACATGTATT
TACAATAAAAATGAAAAGTCTGTCTGTTTGAAAAAAAAAAAAAAAAAACAAAAAAAAAGG
CCACATGTG

consensusID : consensus_385#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [GCGCTATCTGTACTTATCTGGCGGAGAAGTACGGCAAGGACGACAAGCTGTACCCCAAGGACCCGCAGAAGCGTGCCGTAGTAAACCAGCGAATGTACTTCGACATGGGCACTCTATACCAGCGCTTCGCAGACTATTACTATCCTCAAATCTTCGCCAAGCAGCCGGCCAATCCAGAAAATGAACAGAAGATGAAGGATGCAGTTGACTTTCTGAACACCTTCCTGGACGGGCACAAGTACGTGGTAGGTGATAGTCTCACGATTGCCGACCTGTCCATCTTGGCCACAATCTCGACGTACGATGTAGCCGGGTTCGACTTGGCCAAGTACCAACACGTCGCTGCGTGGTACGAAAACATTCGCAAGGAAGCGCCCGGCGCCGCGATTAACCAGGCTGGCATTGAGGAGTTCAAGAAGTACTTTGAGAAGTAAACCGGTTCAACGCTTGTTAAGTTGGTGACATCTACGGGTTGGAGTGTTGTTGTTTTAACATGTATTTACAATAAAAATGAAAAGTCTGTCTGTTTGAAAAAAAAAAAAAAAAAGGCAAATGTGCCGAGC]

[+] EMBL CNS08RYV             [GCGCTATCTGTACTTATCTGGCGGAGAAGTACGGCAAGGACGACAAGCTGTACCCCAAGGACCCGCAGAAGCGTGCCGTAGTAAACCAGCGAATGTACTTCGACATGGGCACTCTATACCAGCGCTTCGCAGACTATTACTATCCTCAAATCTTCGCCAAGCAGCCGGCCAATCCAGAAAATGAACAGAAGATGAAGGATGCAGTTGACTTTCTGAACACCTTCCTGGACGGGCACAAGTACGTGGTAGGTGATAGTCTCACGATTGCCGACCTGTCCATCTTGGCCACAATCTCGACGTACGATGTAGCCGGGTTCGACTTGGCCAAGTACCAACACGTCGCTGCGTGGTACGAAAACATTCGCAAGGAAGCGCCCGGCGCCGCGATTAACCAGGCTGGCATTGAGGAGTTCAAGAAGTACTTTGAGAAGTAAACCGGTTCAACGCTTGTTAAGTTGGTGACATCTACGGGTTGGAGTGTTGTTGTTTTAACATGTATTTACAATAAAAATGAAAAGTCTGTCTGTTTGAAAAAAAAAAAAAAAAAGGCAAATGTGCCGAGC]




>consensus_385#1
GCGCTATCTGTACTTATCTGGCGGAGAAGTACGGCAAGGACGACAAGCTGTACCCCAAGG
ACCCGCAGAAGCGTGCCGTAGTAAACCAGCGAATGTACTTCGACATGGGCACTCTATACC
AGCGCTTCGCAGACTATTACTATCCTCAAATCTTCGCCAAGCAGCCGGCCAATCCAGAAA
ATGAACAGAAGATGAAGGATGCAGTTGACTTTCTGAACACCTTCCTGGACGGGCACAAGT
ACGTGGTAGGTGATAGTCTCACGATTGCCGACCTGTCCATCTTGGCCACAATCTCGACGT
ACGATGTAGCCGGGTTCGACTTGGCCAAGTACCAACACGTCGCTGCGTGGTACGAAAACA
TTCGCAAGGAAGCGCCCGGCGCCGCGATTAACCAGGCTGGCATTGAGGAGTTCAAGAAGT
ACTTTGAGAAGTAAACCGGTTCAACGCTTGTTAAGTTGGTGACATCTACGGGTTGGAGTG
TTGTTGTTTTAACATGTATTTACAATAAAAATGAAAAGTCTGTCTGTTTGAAAAAAAAAA
AAAAAAAGGCAAATGTGCCGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_385#0      TGGTGGTTTATTGGCTACTGGATTACTGTCGAGTCTTCGCTGGTTGAGGATCATCGTCAC 60
consensus_385#1      ------------------------------------------------------------
                                                                                 

consensus_385#0      AGCAATCGTGTTGTCTCCCGCATCGTCTGTCAGTGTATCTCATTAACTGTGTTTGTGTTT 120
consensus_385#1      ------------------------------------------------------------
                                                                                 

consensus_385#0      GAATCTCCAATCTCCACTAATCATCATGGATTTCTATTACCTACCCGGATCTGCCCCGTG 180
consensus_385#1      ------------------------------------------------------------
                                                                                 

consensus_385#0      CCGTGCCGTCCAGATGACGGCGGCCGCCGTTGGGTTGAGCTGAACCTGAAGCTCACCGAC 240
consensus_385#1      ------------------------------------------------------------
                                                                                 

consensus_385#0      CTGATGAAGGGCGAGCACATGAAGCCGGAGTTCCTGAAGATTAACCCACAACACTGCATT 300
consensus_385#1      ------------------------------------------------------------
                                                                                 

consensus_385#0      CCAACGCTGGTCGACAATGGATTCGCCCTGTGGGAGTCCCGCGCTATCTGTACTTATCTG 360
consensus_385#1      ----------------------------------------GCGCTATCTGTACTTATCTG 20
                                                             ********************

consensus_385#0      GCGGAGAAGTACGGCAAGGACGACAAGCTGTACCCCAAGGACCCGCAGAAGCGTGCCGTA 420
consensus_385#1      GCGGAGAAGTACGGCAAGGACGACAAGCTGTACCCCAAGGACCCGCAGAAGCGTGCCGTA 80
                     ************************************************************

consensus_385#0      GTAAACCAGCGAATGTACTTCGACATGGGCACTCTATACCAGCGCTTCGCAGACTATTAC 480
consensus_385#1      GTAAACCAGCGAATGTACTTCGACATGGGCACTCTATACCAGCGCTTCGCAGACTATTAC 140
                     ************************************************************

consensus_385#0      TATCCTCAAATCTTCGCCAAGCAGCCGGCCAATCCAGAAAATGAACAGAAGATGAAGGAT 540
consensus_385#1      TATCCTCAAATCTTCGCCAAGCAGCCGGCCAATCCAGAAAATGAACAGAAGATGAAGGAT 200
                     ************************************************************

consensus_385#0      GCAGTTGACTTTCTGAACACCTTCCTGGACGGGCACAAGTACGTGGCAGGTGATAGTCTC 600
consensus_385#1      GCAGTTGACTTTCTGAACACCTTCCTGGACGGGCACAAGTACGTGGTAGGTGATAGTCTC 260
                     ********************************************** *************

consensus_385#0      ACGATTGCCGACCTGTCCATCTTGGCCACAATCTCGACGTACGATGTAGCCGGGTTCGAC 660
consensus_385#1      ACGATTGCCGACCTGTCCATCTTGGCCACAATCTCGACGTACGATGTAGCCGGGTTCGAC 320
                     ************************************************************

consensus_385#0      TTGGCCAAGTACCAACACGTCGCTGCGTGGTACGAAAACATTCGCAAGGAAGCGCCCGGC 720
consensus_385#1      TTGGCCAAGTACCAACACGTCGCTGCGTGGTACGAAAACATTCGCAAGGAAGCGCCCGGC 380
                     ************************************************************

consensus_385#0      GCCGCGATTAACCAGGCTGGCATTGAGGAGTTCAAGAAGTACTTTGAGAAGTAAACCGGT 780
consensus_385#1      GCCGCGATTAACCAGGCTGGCATTGAGGAGTTCAAGAAGTACTTTGAGAAGTAAACCGGT 440
                     ************************************************************

consensus_385#0      TCAACGCTTGTTAAGTTGGTGACATCTACGGGTTGGAGTGTTGTTGTTTTAACATGTATT 840
consensus_385#1      TCAACGCTTGTTAAGTTGGTGACATCTACGGGTTGGAGTGTTGTTGTTTTAACATGTATT 500
                     ************************************************************

consensus_385#0      TACAATAAAAATGAAAAGTCTGTCTGTTTGAAAAAAAAAAAAAAAAAACAAAAAAAAAGG 900
consensus_385#1      TACAATAAAAATGAAAAGTCTGTCTGTTTGAAAAAAAAAAAAAAAAA---GGCAAATGTG 557
                     ***********************************************      ***   *

consensus_385#0      CCACATGTG 909
consensus_385#1      CCGAGC--- 563
                     **