These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 643 fasta sequence [ATCCGAGGTTATGCAGGCGGAT-CCCGAAGACGCTTCA-CCTGCAGCAGATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGG-CACGAC-GGCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGGCGCAAGTGGCCCCATTGCCGGCAGTCCTGAATACTCCCCCGCCCGAGGGGTTGGAGGTGTGCAGTAAGCGGTGGTGGATAGATGTTGTATATGTTTGTTCATT] [+] EMBL AL695052 [ATCCGAGGTTATGCAGGCGGAT CCCGAAGACGCTTCA CCTGCAGCAGATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGG CACGAC GGCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGGCGCAAGTGGCCCCATTGCCGGCAGTCCTGAATACTCCCCCGCCCGAGGGGTTGGAGGTGTGCAGTAAGCGGTGGTGGATAGATGTTGTATATGTTTGTTCATT] [+] EMBL BX619256 [ CGGATCCCCGAAGACGCTTCACCCTGCAGCAGATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGANGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACNGCCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGGCGCAAGTGGGCNCATTGNCGGCAGTCCTGAATACTCCCCCGC ] consensusID : consensus_3858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [TCCGCCGGAATGGTTAGAGCCGCGGCTGGCCGACTTGCTCGTGAACATACTGCAGGCGGATCCCCGAAGACGCTTCACCCTGCAGCATATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACGGCCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGT] [+] EMBL BX611301 [TCCGCCGGAATGGTTAGAGCCGCGGCTGGCCGACTTGCTCGTGAACATACTGCAGGCGGATCCCCGAAGACGCTTCACCCTGCAGCATATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACGGCCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3858#0 ------------------------------------ATCCGAGGTTAT---GCAGGCGGA 21 consensus_3858#1 TCCGCCGGAATGGTTAGAGCCGCGGCTGGCCGACTTGCTCGTGAACATACTGCAGGCGGA 60 ** * ** ********* consensus_3858#0 TCCC-GAAGACGCTTCACC-TGCAGCAGATCCGGCACCATGAATGGTTCCAGTTTGCACC 79 consensus_3858#1 TCCCCGAAGACGCTTCACCCTGCAGCATATCCGGCACCATGAATGGTTCCAGTTTGCACC 120 **** ************** ******* ******************************** consensus_3858#0 GGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTC 139 consensus_3858#1 GGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTC 180 ************************************************************ consensus_3858#0 CACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTA 199 consensus_3858#1 CACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTA 240 ************************************************************ consensus_3858#0 CACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGG 259 consensus_3858#1 CACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGG 300 ************************************************************ consensus_3858#0 ACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGA 319 consensus_3858#1 ACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGA 360 ************************************************************ consensus_3858#0 CGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAG 379 consensus_3858#1 CGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAG 420 ************************************************************ consensus_3858#0 CGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAG 439 consensus_3858#1 CGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAG 480 ************************************************************ consensus_3858#0 CATCCGGCACATGATCGGCACCAGCTGCCCGGC-ACGACGGC-AACAGCAGCAGCAGCAG 497 consensus_3858#1 CATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACGGCCAACAGCAGCAGCAGCAG 540 ********************************* ******** ***************** consensus_3858#0 CGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGGCGCAAGTGGCCCCATTG 557 consensus_3858#1 CGGCAAGCGGCGCTCGCGCAAAACTGT--------------------------------- 567 *************************** consensus_3858#0 CCGGCAGTCCTGAATACTCCCCCGCCCGAGGGGTTGGAGGTGTGCAGTAAGCGGTGGTGG 617 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 ATAGATGTTGTATATGTTTGTTCATT 643 consensus_3858#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||