|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[CCGCGGACGCGTGGGCTCCGGAATTGGCTCCGAAACCAACTTCGGAATCGGCTCCGGAATCGGCTCCGGAACCAACTCCGGAATCGGATCCGGAATCGACTCCGGAATCAGAATCGATTCCAGCATTGGAATCGGTTCCGGAATTGATTCCGAACACGGAATCGGGTAGGTCCGATTCCGAGCTCCCACCACTATCTTGAAGAAACAATCTCTTCTTCTTCTTCTTATCGTTTCGAGGTTATTCTCCGGTTCGGTAATGGAATTCAGCTTCCTGGACGCTCCGCTACTAATCCGTGGTTGCGATCTATTGTTAACCTCTTTGGCAAGCTGCTCTATCAGGCCCAGCTGCTAAGGCTATATGTCCTAATAAGCGATTTGAATTTCTAGTAATCCCTATCAAAGTTGTTTTAACGTATTTTTTCGAGTCGTTGCATCGAGTGTAAATTCTGCCTCTTTTTGCGTGTCTGTGTCGGAACAGATATTCAGATATTCATTAGTTACTTCAGATTCATAAAATATTAGCTATTCACTAACTTTTAACGATTCATGAATCTGTGGAGATTCGATTAGAATGAATCTTTATGAAATATTCTAGAAGCACAACACTACTAGAAATCATTATGAATATTACGTAGTTTATGGATAAGCCCCTATAT]
[+] EMBL BM602072 [CCGCGGACGCGTGGGCTCCGGAATTGGCTCCGAAACCAACTTCGGAATCGGCTCCGGAATCGGCTCCGGAACCAACTCCGGAATCGGATCCGGAATCGACTCCGGAATCAGAATCGATTCCAGCATTGGAATCGGTTCCGGAATTGATTCCGAACACGGAATCGGGTAGGTCCGATTCCGAGCTCCCACCACTATCTTGAAGAAACAATCTCTTCTTCTTCTTCTTATCGTTTCGAGGTTATTCTCCGGTTCGGTAATGGAATTCAGCTTCCTGGACGCTCCGCTACTAATCCGTGGTTGCGATCTATTGTTAACCTCTTTGGCAAGCTGCTCTATCAGGCCCAGCTGCTAAGGCTATATGTCCTAATAAGCGATTTGAATTTCTAGTAATCCCTATCAAAGTTGTTTTAACGTATTTTTTCGAGTCGTTGCATCGAGTGTAAATTCTGCCTCTTTTTGCGTGTCTGTGTCGGAACAGATATTCAGATATTCATTAGTTACTTCAGATTCATAAAATATTAGCTATTCACTAACTTTTAACGATTCATGAATCTGTGGAGATTCGATTAGAATGAATCTTTATGAAATATTCTAGAAGCACAACACTACTAGAAATCATTATGAATATTACGTAGTTTATGGATAAGCCCCTATAT]
consensusID : consensus_3872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence
[GTCAACTCCGGAATCGGCTCCGGTGCCGACTCCGGAATCGGCTTCGGAGCCAACTCTGGAATCGGCTCTGGAATCGGTTCCGGAGTCGGCTTCGGAATCGGCTCCGGAGTCGAATCCGGAATCAGAATCGATTCCAGCATCGGAATCGGCTCCGGAATTGATTCCGAGCACGGAATCGAAATCGGGTAGGTCCGATTCCGAGCTCCCACCACTAGTTGGGAGCCTTCCGGAGTCGTCCGGAGTCGTACGGGGTCGTTCGTAGTCGGAGTCGTCTGGAGTCGTTTGGAGTCGTCCGAACAACTCTGGACGACTCCGAATGACTCTTGAAGGTCCGGACGACTCCGAACGACTCGGGACGATTCCGAACGACTGTGGATGATGCAGGGCGGACCTACCTTCCGGAGTCGATTCCGAAGTAATCGGAGTTGGATCGGAGTCGACTCCGGATTTTTGCCAACATCACTAGTCGTTAGCACTGATTTTGGTAGCCATGATGAACGGAGAATTCTATGGAGATTAGCAGATAGGGAGCTATGGTTGCTAAGGACTTTGTATGAGTTGTTAAGTAACTTTGGACTCCATAGAATAAAGATTTGTAAACATACACTGTAGGCGGAC]
[+] EMBL BX611850 [GTCAACTCCGGAATCGGCTCCGGTGCCGACTCCGGAATCGGCTTCGGAGCCAACTCTGGAATCGGCTCTGGAATCGGTTCCGGAGTCGGCTTCGGAATCGGCTCCGGAGTCGAATCCGGAATCAGAATCGATTCCAGCATCGGAATCGGCTCCGGAATTGATTCCGAGCACGGAATCGAAATCGGGTAGGTCCGATTCCGAGCTCCCACCACTAGTTGGGAGCCTTCCGGAGTCGTCCGGAGTCGTACGGGGTCGTTCGTAGTCGGAGTCGTCTGGAGTCGTTTGGAGTCGTCCGAACAACTCTGGACGACTCCGAATGACTCTTGAAGGTCCGGACGACTCCGAACGACTCGGGACGATTCCGAACGACTGTGGATGATGCAGGGCGGACCTACCTTCCGGAGTCGATTCCGAAGTAATCGGAGTTGGATCGGAGTCGACTCCGGATTTTTGCCAACATCACTAGTCGTTAGCACTGATTTTGGTAGCCATGATGAACGGAGAATTCTATGGAGATTAGCAGATAGGGAGCTATGGTTGCTAAGGACTTTGTATGAGTTGTTAAGTAACTTTGGACTCCATAGAATAAAGATTTGTAAACATACACTGTAGGCGGAC]
[+] EMBL BX612171 [ AGTCGATTCCGAAGTAATCGGAGTTGGATCGGAGTCGACTCCGGATTGTTGCCAACATCACTAGTCGTTAGCACTGATTTTGGTAGCCATGATGAACGGAGAATTCTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3872#0 --------------CCGCGGACGCGTGGGCTCCGGAATTGGCTCCGAAACCAACTTCGGA 46
consensus_3872#1 GTCAACTCCGGAATCGGCTCCGGTGCCGACTCCGGAATCGGCTTCGGAGCCAACTCTGGA 60
* ** * * * ********* **** ** * ****** ***
consensus_3872#0 ATCGGCTCCGGAATCGGCTCCGGAACCAACTCCGGAATCGGATCCGGAATCGACTCCGGA 106
consensus_3872#1 ATCGGCTCTGGAATCGGTTCCGGAGTCGGCTTCGGAATCGGCTCCGGAGTCGAATCCGGA 120
******** ******** ****** * ** ********* ****** **** ******
consensus_3872#0 ATCAGAATCGATTCCAGCATTGGAATCGGTTCCGGAATTGATTCCGAACACGGAATCG-- 164
consensus_3872#1 ATCAGAATCGATTCCAGCATCGGAATCGGCTCCGGAATTGATTCCGAGCACGGAATCGAA 180
******************** ******** ***************** **********
consensus_3872#0 ----GGTAGGTCCGATTCCGAGCTCCCACCACTATCTTGAAGAAACAATCTCTTCTTCTT 220
consensus_3872#1 ATCGGGTAGGTCCGATTCCGAGCTCCCACCACTAGTTGGGAG------CCTTCCGGAGTC 234
****************************** * * ** ** *
consensus_3872#0 CTTCTTATCGTTTCGAGGTTATTCTCCGGTTCGGTAATGGAATTCAGCTTCCTGGACGCT 280
consensus_3872#1 GTCCGGAGTCGTACGGGGTCGTTCGTAG--TCGG-AGTCGTCTGGAGTCGTTTGGAGTCG 291
* * * * ** *** *** * **** * * * * ** **** *
consensus_3872#0 CCGCTACTAATCCG--TGGTTGCGATCTATTGTTAACCTCTTTGGCAAG-CTGCTCTATC 337
consensus_3872#1 TCCGAACAACTCTGGACGACTCCGAATGACTCTTGAAGGTCCGGACGACTCCGAACGACT 351
* ** * ** * * * *** * * ** * * * * * * * *
consensus_3872#0 AGGCCCAGCTGCTAA-GGCTATATGTCCTAATAAGCGATTTGAATTTCTAGTAATCCCTA 396
consensus_3872#1 CGGGACGATTCCGAACGACTGTGGATGATGCAGGGCGGACCTACCTTCCGG-AGTCGATT 410
** * * * ** * ** * * * *** * *** * * ** *
consensus_3872#0 TCAAAGTTGTTTTAACGTATTTTTTCGAGTCGTTGCATCGAGTGTAAATTCTGCCTCTTT 456
consensus_3872#1 CCGAAGTAATCGGAG---------TTGGATCG--GAGTCGACTCCGGATTTTTGCCAACA 459
* **** * * * * *** * **** * *** * *
consensus_3872#0 TTGCGTGTCTGTGTCGGAACAGATATTCAGATATTCATTAGTTACTTCAGATTCATAAAA 516
consensus_3872#1 TCACTAGTC---GTTAGCACTGATTTT--GGTAGCCATGATGAACGGAGAATTCTATGGA 514
* * *** ** * ** *** ** * ** *** * ** **** *
consensus_3872#0 TATTAGCTATTCACTAACTTTTAACGATTCATGAATCTGTGGAGATT--CGATTAGAATG 574
consensus_3872#1 GATTAGCAGAT-AGGGAGCTATGGTTGCTAAGGACTTTGTATGAGTTGTTAAGTAACTTT 573
****** * * * * * * * ** * *** ** * ** *
consensus_3872#0 AATCTTTATGAAATAT---TCTAGAAGCACAACACTACTAGAAATCATTATGAATATTAC 631
consensus_3872#1 GGACTCCATAGAATAAAGATTTGTAAACATA-CACTGTAGGCGGAC-------------- 618
** ** **** * * ** ** * **** * *
consensus_3872#0 GTAGTTTATGGATAAGCCCCTATAT 656
consensus_3872#1 -------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||