These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3876#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGCCAAGCGCGCGCGTGGTTGTTGTAGAAGCGAAGGTTTGCAACGCAACGATCGTGTGCCGCACGATAGAAACTGCTCCGCTGCTAAAGACAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTGCCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGCAATACAATCAAACTTGAGCGCCCCCTGTCTGCCGCCCACCGTAGATGGCCACCAGCAGCAGGTTGCAACACATTTTAGCCAAGTGAATCGGTGAAATTTAGCAAATTGGACATGCAGTGCATACGTCGACCGTTCCCATTCCGGTGCTAGCAGGTTACATGTGAAGTGTGCATATTTTAAAAACACAACCAAAAAAAAAAAACATCTACCGTGCGGGTTCCAAACGGGTTCGCAAAACTGTGCCAGCACGCCTAGGC] [+] EMBL BM613405 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGCCAAGCGCGCGCGTGGTTGTTGTAGAAGCGAAGGTTTGCAACGCAACGATCGTGTGCCGCACGATAGAAACTGCTCCGCTGCTAAAGACAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTGCCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGCAATACAATCAAACTTGAGCGCCCCCTGTCTGCCGCCCACCGTAGATGGCCACCAGCAGCAGGTTGCAACACATTTTAGCCAAGTGAATCGGTGAAATTTAGCAAATTGGACATGCAGTGCATACGTCGACCGTTCCCATTCCGGTGCTAGCAGGTTACATGTGAAGTGTGCATATTTTAAAAACACAACCAAAAAAAAAAAACATCTACCGTGCGGGTTCCAAACGGGTTCGCAAAACTGTGCCAGCACGCCTAGGC] consensusID : consensus_3876#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [CACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGCAATACAATCAAAGTGTGTGTAGCCAACGTTAAAAGCAGACAAAAAAGTATGGTGTCCTGGTGATGATGCGTTCTTGCTGCGACG] [+] EMBL BX616731 [CACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGCAATACAATCAAAGTGTGTGTAGCCAACGTTAAAAGCAGACAAAAAAGTATGGTGTCCTGGTGATGATGCGTTCTTGCTGCGACG] consensusID : consensus_3876#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [CCGCCCACGCGTCCGAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGCTTGAGCGCCCCCTGTCTGCCGCCCACCGTAGATGGGCACCAGCAGCAGGTTGCAACAC] [+] EMBL BM601729 [CCGCCCACGCGTCCGAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGCTTGAGCGCCCCCTGTCTGCCGCCCACCGTAGATGGGCACCAGCAGCAGGTTGCAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3876#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGCCAAGCGCGCGCGTGGTTGTTGTAGAAGCG 60 consensus_3876#1 ------------------------------------------------------------ consensus_3876#2 ------------------------------------------------------------ consensus_3876#0 AAGGTTTGCAACGCAACGATCGTGTGCCGCACGATAGAAACTGCTCCGCTGCTAAAGACA 120 consensus_3876#1 ------------------------------------------------------------ consensus_3876#2 --------------------------------------------CCGCCCACGCGTCCGA 16 consensus_3876#0 AAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCG 180 consensus_3876#1 -----------------------CACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCG 37 consensus_3876#2 AAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCG 76 ************************************* consensus_3876#0 TCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTGCCGCTGCCGACAATGTGCAGTG 240 consensus_3876#1 TCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTG 97 consensus_3876#2 TCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTG 136 ************************************* ********************** consensus_3876#0 ACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCAC 300 consensus_3876#1 ACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCAC 157 consensus_3876#2 ACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCAC 196 ************************************************************ consensus_3876#0 GGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTG 360 consensus_3876#1 GGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTG 217 consensus_3876#2 GGAGTCAAACGAACGCTTGAGCGCCCCCTGTCTGCCGC-CCACCGTAGATGGGCACCAGC 255 *************** *** * *** ** * ** ***** * * consensus_3876#0 AAGTGGTGATCGCCCGAAAGGGCAATACAATCAAACT-TGAGCGCCCCCTGTCTGCCGCC 419 consensus_3876#1 AAGTGGTGATCGCCCGAAAGGGCAATACAATCAAAGTGTGTGTAGCCAACGTTAAAAGCA 277 consensus_3876#2 AGCAGGTTGCAACAC--------------------------------------------- 270 * *** * * consensus_3876#0 CACCGTAGATGGCCACCAGCAGCAGGTTGCAACACATTTTAGCCAAGTGAATCGGTGAAA 479 consensus_3876#1 GAC---AAAAAAGTATGGTGTCCTGGTGATGATGCGTTCTTGCTGCGACG---------- 324 consensus_3876#2 ------------------------------------------------------------ consensus_3876#0 TTTAGCAAATTGGACATGCAGTGCATACGTCGACCGTTCCCATTCCGGTGCTAGCAGGTT 539 consensus_3876#1 ------------------------------------------------------------ consensus_3876#2 ------------------------------------------------------------ consensus_3876#0 ACATGTGAAGTGTGCATATTTTAAAAACACAACCAAAAAAAAAAAACATCTACCGTGCGG 599 consensus_3876#1 ------------------------------------------------------------ consensus_3876#2 ------------------------------------------------------------ consensus_3876#0 GTTCCAAACGGGTTCGCAAAACTGTGCCAGCACGCCTAGGC 640 consensus_3876#1 ----------------------------------------- consensus_3876#2 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||