cluster # 3890

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Anopheles gambiae
cluster # 3890 cluster # 3890 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3890#0 length = 1198 sequences # 2

consensus_3890#1 length = 779 sequences # 1

consensusID : consensus_3890#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1198
fasta sequence

                              [CCGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTCGGCGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGGCACTGACCATGATACACACGATACGGGAGGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCAGACGCGATGAACGAACGGATCGGCTATCCGGACATTCTGACCAATGCGGACGAGTTGGAGAAGGAGTACGTGAATCTCACGATACACGGTGGTTTGTTTTTGGAAAACATTCTAAGCATACTGAAGTGGGAGGCTGAGCGGAACCTGCAGCTGCTGCGCAAACCGGTTGACAAAAACAAGTGGGCAACGGAACCGGCCGTTGTAAACGCGTTCTATAATCCCAACAAGAATGATATAGTATTTCCCGCCGGCATTCTGCAGCCGCTGTTCTACAGCCAAAACTTCCCGAAATCGCTCAACTACGGCGGCATCGGGGTGGTGATCGGGCACGAAATAACGCACGGGTTCGACGACAAGGGCCGCCAGTTCGATAAGGACGGCAACATGATGCAATGGTGGAACAATGCAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGATCAGTATTCGCGCTACAAAATCGACGAGGTGGGCCTGTACATGGACGGGCGGATGACGCAGGGCGAAAACATTGCCGACAACGGGGGCCTCAAGCAGTCGTATCGGGCATACCGCAAGTGGGTTAGCCAGCACGGGTCGGAACCGGACCTGCCGGGGCTAAACATGACCCACGATCAGCTGTTCTTTCTCAACTACGCCCAGATTTGGTGCGGTTCGATGCGGCCCGAGGACGCACTGACCAAGATCCGGTCGTCGGTACACTCGCCCGGCATAATACGTGTGATTGGGCCGCTGTCGAACTCGCGCGACTTTGCCGAAGCGTACCGGTGTCCGCTCGGTTCGCCGATGAATCCTGTTAGTAAATGTAGCGTGTGGTAAGATAAAAGCTGGTCTTTAGGTGTAGTGTTTGTTTGTTTGTTTGTGTTTTTAAGGAAACCTGTAATAATATTAACGATAATTATGATTGCTATTCTTATGATTGCTGTAACTACTATGATTTCGTACAAAGGCACATATCAACAGTTGAATAGTTGAGCTA]

[+] EMBL BM631864             [CCGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTCGGCGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGGCACTGACCATGATACACACGATACGGGAGGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCAGACGCGATGAACGAACGGATCGGCTATCCGGACATTCTGACCAATGCGGACGAGTTGGAGAAGGAGTACGTGAATCTCACGATACACGGTGGTTTGTTTTTGGAAAACATTCTAAGCATACTGAAGTGGGAGGCTGAGCGGAACCTGCAGCTGCTGCGCAAACCGGTTGACAAAAACAAGTGGGCAACGGAACCGGCCGTTGTAAACGCGTTCTATAATCCCAACAAGAATGATATAGTATTTCCCGCCGGCATTCTGCAGCCGCTGTTCTACAGCCAAAACTTCCCGAAATCGCTCAACTACGGCGGCATCGGGGTGGTGATCGGGCACGAAATAACGCACGGGTTCGACGACAAGGGCCGCCAGTTCGATAAGGACGGCAACATGATGCAATGGTGGAACAATGCAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGATCAGTATTCGCGCTACAAAATCGACGAGGTGGGCCTGTACATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX616094             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGGCGGCATCGGGGTGGTGATCGGGCACGAAATAACGCACGGGTTCGACGACAAGGGCCGCCAGTTCGACAAGGACGGCAACATGATGCAATGGTGGAACAATGCAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGATCAGTATTCGCGCTACAAAATCGACGAGGTGGGCCTGTACATGGACGGGCGGATGACGCAGGGCGAAAACATTGCCGACAACGGGGGCCTCAAGCAGTCGTATCGGGCATACCGCAAGTGGGTTAGCCAGCACGGGTCGGAACCGGACCTGCCGGGGCTAAACATGACCCACGATCAGCTGTTCTTTCTCAACTACGCCCAGATTTGGTGCGGTTCGATGCGGCCCGAGGACGCACTGACCAAGATCCGGTCGTCGGTACACTCGCCCGGCATAATACGTGTGATTGGGCCGCTGTCGAACTCGCGCGACTTTGCCGAAGCGTACCGGTGTCCGCTCGGTTCGCCGATGAATCCTGTTAGTAAATGTAGCGTGTGGTAAGATAAAAGCTGGTCTTTAGGTGTAGTGTTTGTTTGTTTGTTTGTGTTTTTAAGGAAACCTGTAATAATATTAACGATAATTATGATTGCTATTCTTATGATTGCTGTAACTACTATGATTTCGTACAAAGGCACATATCAACAGTTGAATAGTTGAGCTA]




>consensus_3890#0
CCGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTC
GGCGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGGCACTGACCATG
ATACACACGATACGGGAGGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGAC
GAGACGCGTGCCGTCGCGAAGGAGAAGGCAGACGCGATGAACGAACGGATCGGCTATCCG
GACATTCTGACCAATGCGGACGAGTTGGAGAAGGAGTACGTGAATCTCACGATACACGGT
GGTTTGTTTTTGGAAAACATTCTAAGCATACTGAAGTGGGAGGCTGAGCGGAACCTGCAG
CTGCTGCGCAAACCGGTTGACAAAAACAAGTGGGCAACGGAACCGGCCGTTGTAAACGCG
TTCTATAATCCCAACAAGAATGATATAGTATTTCCCGCCGGCATTCTGCAGCCGCTGTTC
TACAGCCAAAACTTCCCGAAATCGCTCAACTACGGCGGCATCGGGGTGGTGATCGGGCAC
GAAATAACGCACGGGTTCGACGACAAGGGCCGCCAGTTCGATAAGGACGGCAACATGATG
CAATGGTGGAACAATGCAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGAT
CAGTATTCGCGCTACAAAATCGACGAGGTGGGCCTGTACATGGACGGGCGGATGACGCAG
GGCGAAAACATTGCCGACAACGGGGGCCTCAAGCAGTCGTATCGGGCATACCGCAAGTGG
GTTAGCCAGCACGGGTCGGAACCGGACCTGCCGGGGCTAAACATGACCCACGATCAGCTG
TTCTTTCTCAACTACGCCCAGATTTGGTGCGGTTCGATGCGGCCCGAGGACGCACTGACC
AAGATCCGGTCGTCGGTACACTCGCCCGGCATAATACGTGTGATTGGGCCGCTGTCGAAC
TCGCGCGACTTTGCCGAAGCGTACCGGTGTCCGCTCGGTTCGCCGATGAATCCTGTTAGT
AAATGTAGCGTGTGGTAAGATAAAAGCTGGTCTTTAGGTGTAGTGTTTGTTTGTTTGTTT
GTGTTTTTAAGGAAACCTGTAATAATATTAACGATAATTATGATTGCTATTCTTATGATT
GCTGTAACTACTATGATTTCGTACAAAGGCACATATCAACAGTTGAATAGTTGAGCTA

consensusID : consensus_3890#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [CCCCCGAGGTTNACATATCGACGACTACCAGAAGGAGCGCGTCGAGTTTCGGCGCAAGCTGCTCGGCATCCAGTCGGAGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTCGGTGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGTGCACTGACCATGATACACACGATACGGGAGTGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCGGACGCGATGAACCGAACGGATCCGGGTATCCGGACATTCTTGACCAATGCGGACGANTTTGGAGAAGGAGTACGTTGAATCTCACGATACACGGTTGGTTTGGATTTGGAAAACATTCTAAGCATACTGAAAGTGGGGAGGCTGANCGGAACCTTGCAGCTTGCTGCGGCAAACACGGGTTGACACAAAACAAGGTTGGCNAACGGAACCGGCGTTTGTAAAAACGCCGGTTCTATTAATTCCCAAACAAGAAATGATATAGTATTTCCCCGGCGGCCATTCTTGGAGGCCGCCTTGTTACTAAACAAGGCCAAAAAACGTTTCCCCGAAACTCCGCGTCCACACTAACGAGGCGGGGCATCACGCAGGGTAGGGTTGGCATACGGGGGCACCGAAAATTAACTCGCGACCGGGGGTTTCCNAAGCACACACAGGGGGCCNCCCACANGTTTCAGAACCACANGGACNGGNACCATNATGCACTCGTGGAC]

[+] EMBL AL695540             [CCCCCGAGGTTNACATATCGACGACTACCAGAAGGAGCGCGTCGAGTTTCGGCGCAAGCTGCTCGGCATCCAGTCGGAGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTCGGTGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGTGCACTGACCATGATACACACGATACGGGAGTGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCGGACGCGATGAACCGAACGGATCCGGGTATCCGGACATTCTTGACCAATGCGGACGANTTTGGAGAAGGAGTACGTTGAATCTCACGATACACGGTTGGTTTGGATTTGGAAAACATTCTAAGCATACTGAAAGTGGGGAGGCTGANCGGAACCTTGCAGCTTGCTGCGGCAAACACGGGTTGACACAAAACAAGGTTGGCNAACGGAACCGGCGTTTGTAAAAACGCCGGTTCTATTAATTCCCAAACAAGAAATGATATAGTATTTCCCCGGCGGCCATTCTTGGAGGCCGCCTTGTTACTAAACAAGGCCAAAAAACGTTTCCCCGAAACTCCGCGTCCACACTAACGAGGCGGGGCATCACGCAGGGTAGGGTTGGCATACGGGGGCACCGAAAATTAACTCGCGACCGGGGGTTTCCNAAGCACACACAGGGGGCCNCCCACANGTTTCAGAACCACANGGACNGGNACCATNATGCACTCGTGGAC]




>consensus_3890#1
CCCCCGAGGTTNACATATCGACGACTACCAGAAGGAGCGCGTCGAGTTTCGGCGCAAGCT
GCTCGGCATCCAGTCGGAGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAA
GCTCGGCATGGCGGTCGGTGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGA
GACGTGCACTGACCATGATACACACGATACGGGAGTGCATTTAACGAGCTGCTGGCGGAC
ATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCGGACGCGATGAAC
CGAACGGATCCGGGTATCCGGACATTCTTGACCAATGCGGACGANTTTGGAGAAGGAGTA
CGTTGAATCTCACGATACACGGTTGGTTTGGATTTGGAAAACATTCTAAGCATACTGAAA
GTGGGGAGGCTGANCGGAACCTTGCAGCTTGCTGCGGCAAACACGGGTTGACACAAAACA
AGGTTGGCNAACGGAACCGGCGTTTGTAAAAACGCCGGTTCTATTAATTCCCAAACAAGA
AATGATATAGTATTTCCCCGGCGGCCATTCTTGGAGGCCGCCTTGTTACTAAACAAGGCC
AAAAAACGTTTCCCCGAAACTCCGCGTCCACACTAACGAGGCGGGGCATCACGCAGGGTA
GGGTTGGCATACGGGGGCACCGAAAATTAACTCGCGACCGGGGGTTTCCNAAGCACACAC
AGGGGGCCNCCCACANGTTTCAGAACCACANGGACNGGNACCATNATGCACTCGTGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3890#0      ------------------------------------------------------------
consensus_3890#1      CCCCCGAGGTTNACATATCGACGACTACCAGAAGGAGCGCGTCGAGTTTCGGCGCAAGCT 60
                                                                                  

consensus_3890#0      ----------------CCGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAA 44
consensus_3890#1      GCTCGGCATCCAGTCGGAGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAA 120
                                        ******************************************

consensus_3890#0      GCTCGGCATGGCGGTCGGCGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGA 104
consensus_3890#1      GCTCGGCATGGCGGTCGGTGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGA 180
                      ****************** *****************************************

consensus_3890#0      GACG-GCACTGACCATGATACACACGATACGGGAG-GCATTTAACGAGCTGCTGGCGGAC 162
consensus_3890#1      GACGTGCACTGACCATGATACACACGATACGGGAGTGCATTTAACGAGCTGCTGGCGGAC 240
                      **** ****************************** ************************

consensus_3890#0      ATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCAGACGCGATGAAC 222
consensus_3890#1      ATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCGGACGCGATGAAC 300
                      *********************************************** ************

consensus_3890#0      -GAACGGATC-GGCTATCCGGACATTCT-GACCAATGCGGACGAGTT-GGAGAAGGAGTA 278
consensus_3890#1      CGAACGGATCCGGGTATCCGGACATTCTTGACCAATGCGGACGANTTTGGAGAAGGAGTA 360
                       ********* ** ************** *************** ** ************

consensus_3890#0      CGT-GAATCTCACGATACACGGT-GGTTTGTTTTTGGAAAACATTCTAAGCATACTGAAG 336
consensus_3890#1      CGTTGAATCTCACGATACACGGTTGGTTTGGATTTGGAAAACATTCTAAGCATACTGAAA 420
                      *** ******************* ******  *************************** 

consensus_3890#0      T--GGGAGGCTGAGCGGAACCT-GCAGCT-GCTGCG-CAAACC--GGTTGACA-AAAACA 388
consensus_3890#1      GTGGGGAGGCTGANCGGAACCTTGCAGCTTGCTGCGGCAAACACGGGTTGACACAAAACA 480
                         ********** ******** ****** ****** *****   ******** ******

consensus_3890#0      AG--TGGGCAACGGAACCGGCCGTTGTAAACGCG----TTCTAT-AATCCC--AACAAGA 439
consensus_3890#1      AGGTTGGCNAACGGAACCGGCGTTTGTAAAAACGCCGGTTCTATTAATTCCCAAACAAGA 540
                      **  ***  ************  *******  **    ****** *** **  *******

consensus_3890#0      A-TGATATAGTATTTCCC-GCCGGCATTCTGCAGCCGCTGTTCTACAGCCAAA-ACTTCC 496
consensus_3890#1      AATGATATAGTATTTCCCCGGCGGCCATTCTTGGAGGCCGCCTTGTTACTAAACAAGGCC 600
                      * **************** * ****  *     *  ** *   *    * *** *   **

consensus_3890#0      CGAAATCGCTCAACTACGGCGGCATCGGGGTGGTGATCGGGCACGAAATAACGCACGGGT 556
consensus_3890#1      AAAAAACGTTTCCCCGAAACTCCGCGTCCACACTAACGAGGCGGGGCATCACGCA-GGGT 659
                        *** ** *   *     *  *          * *   ***  *  ** ***** ****

consensus_3890#0      TCGACGACAAGGGCCGCCAGTTCGATAAGGACGGCAACATGATGCAATGGTGGAACAATG 616
consensus_3890#1      ---------AGGGTTGGC------ATACGGG-GGCACCGAAAATTAACT---------CG 694
                               ****  * *      *** **  **** *   *   **            *

consensus_3890#0      CAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGATCAGTATTCGCGCTACA 676
consensus_3890#1      CGACCG----GGGGTTTCCNAAGCACACACAGGGGGCCNCCCACANGTTTCAGAACCACA 750
                      * ***     *   ** *   ***   * *** *   *  * *   ** *  *  * ***

consensus_3890#0      AAATCGACGAGGTGGGCCTGTACATGGACGGGCGGATGACGCAGGGCGAAAACATTGCCG 736
consensus_3890#1      NGGACNGGNACCATNATGCACTCGTGGAC------------------------------- 779
                          *    *            * *****                               

consensus_3890#0      ACAACGGGGGCCTCAAGCAGTCGTATCGGGCATACCGCAAGTGGGTTAGCCAGCACGGGT 796
consensus_3890#1      ------------------------------------------------------------
                                                                                  

consensus_3890#0      CGGAACCGGACCTGCCGGGGCTAAACATGACCCACGATCAGCTGTTCTTTCTCAACTACG 856
consensus_3890#1      ------------------------------------------------------------
                                                                                  

consensus_3890#0      CCCAGATTTGGTGCGGTTCGATGCGGCCCGAGGACGCACTGACCAAGATCCGGTCGTCGG 916
consensus_3890#1      ------------------------------------------------------------
                                                                                  

consensus_3890#0      TACACTCGCCCGGCATAATACGTGTGATTGGGCCGCTGTCGAACTCGCGCGACTTTGCCG 976
consensus_3890#1      ------------------------------------------------------------
                                                                                  

consensus_3890#0      AAGCGTACCGGTGTCCGCTCGGTTCGCCGATGAATCCTGTTAGTAAATGTAGCGTGTGGT 1036
consensus_3890#1      ------------------------------------------------------------
                                                                                  

consensus_3890#0      AAGATAAAAGCTGGTCTTTAGGTGTAGTGTTTGTTTGTTTGTTTGTGTTTTTAAGGAAAC 1096
consensus_3890#1      ------------------------------------------------------------
                                                                                  

consensus_3890#0      CTGTAATAATATTAACGATAATTATGATTGCTATTCTTATGATTGCTGTAACTACTATGA 1156
consensus_3890#1      ------------------------------------------------------------
                                                                                  

consensus_3890#0      TTTCGTACAAAGGCACATATCAACAGTTGAATAGTTGAGCTA 1198
consensus_3890#1      ------------------------------------------