These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGGGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCATCGGTGGGTACGCCCGCACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCGTCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGAACGGAAGCGGAA] [+] EMBL BM587283 [CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGGGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCATCGGTGGGTACGCCCGCACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCGTCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGAACGGAAGCGGAA] [+] EMBL BM608792 [CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGTGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAGCTTTTCCCCCTGTCTATCGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGTGAGCGATGCATCGGTGGGTACGCCCGCACGGTGTCGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCAATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTTAACCGGTTCAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGTATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGAAGCGGA ] consensusID : consensus_3895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTGGAGCGCGGCTGTGGCTGTCGGATCGGCGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTCCTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGGTGGACCATCCATTGTGGATGAGGCCATTCGCACAGGTTCCTGTACACCGGGCGATCATCCGACCATTCCGATGAATNCCGGTGTTCCGAATTATCAAANGGGTCGTCAGGTCAACGAACGGACATCGGGTTGCTGATCAGTGCANAGCTTCCGGCTACACAAAGACCTGGTCANGGGACATTGTGC] [+] EMBL AL695595 [AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTGGAGCGCGGCTGTGGCTGTCGGATCGGCGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTCCTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGGTGGACCATCCATTGTGGATGAGGCCATTCGCACAGGTTCCTGTACACCGGGCGATCATCCGACCATTCCGATGAATNCCGGTGTTCCGAATTATCAAANGGGTCGTCAGGTCAACGAACGGACATCGGGTTGCTGATCAGTGCANAGCTTCCGGCTACACAAAGACCTGGTCANGGGACATTGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3895#0 CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGG 60 consensus_3895#1 ------------------------------------------------------------ consensus_3895#0 GTTTCTTCCCACGTTTCGCGGTCATCTGC--TTGCTTGCCTCGTTCAGTGCAATCGGTGC 118 consensus_3895#1 --------AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCG-CCGGTGC 51 * ** *** ** * * ** ** * ** ** * * ****** consensus_3895#0 TGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCG 178 consensus_3895#1 TGCTGGTAAATGTGGACAACAGCCTGGAACC-----GGAATTCAACCGGTTTAACAAGAG 106 ****** * * ** ** * * * * *** *** * * consensus_3895#0 CTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCAT 238 consensus_3895#1 TCT---GGTGCTGGA--GCGCGGCTGTGGC---TGTCGGATCGGCGTGATTGGGGT-CAT 157 * ** * ** * *** *** * ** ** **** * * * * *** consensus_3895#0 CGGTGGGTACGCCCG-CACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACG 297 consensus_3895#1 CC-TCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAG-GACGAGGTC 215 * * * *** *** *** * * * * **** ** *** *** consensus_3895#0 CAATCTACCTGAACGCGG---GCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACC 354 consensus_3895#1 GAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTC 275 ** * * * * *** * * *** *** *** * * ** * ** * ** * consensus_3895#0 --GATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGG 412 consensus_3895#1 CTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGG 335 * * * * * *** *** * * **** * * ** * ** consensus_3895#0 CA-ACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGAC-GATCGCG 470 consensus_3895#1 TGGACCATCCATT-GTGGATGAGGCCATTCGCACAG----GTTCCTGTACACCGGGCGAT 390 ***** ** * *** ** * * *** *** * ** * ** consensus_3895#0 TCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAAC 530 consensus_3895#1 CATCCGACCATTCCGATGAATNCCGGT----GTTCCGAATTA----TCAAANGGGTCGTC 442 *** * * * * *** * ** *** **** ** * * consensus_3895#0 AAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGC 590 consensus_3895#1 AG--GTC---AACGAACGGACATCGGGTTGCTGATCAGTGC-ANAGCTTCCGGCTACACA 496 * *** * * * * **** * **** * * * * * * ** consensus_3895#0 ACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATC 650 consensus_3895#1 AAGACCTGGTCANGGGACATTGTGC----------------------------------- 521 * **** ** * ** * consensus_3895#0 CGAACGGAAGCGGAA 665 consensus_3895#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||