These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CCGCTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTT] [+] EMBL BM600850 [CCGCTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTT] consensusID : consensus_3909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [GTTGGCTGCACTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTGTGTCTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTTGCTAACGCGTGTGAAAGGCTGCTCGCGGTGGGGGACGACCGGCACTAGTCGATTGGTGTAATAGTAGAAAATATAAAACAAAGAAGAAGACAACATTACACCAACATATTCAACAAACTCACAAGAAAAAAGCAAACTGA] [+] EMBL BM633128 [GTTGGCTGCACTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTGTGTCTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTTGCTAACGCGTGTGAAAGGCTGCTCGCGGTGGGGGACGACCGGCACTAGTCGATTGGTGTAATAGTAGAAAATATAAAACAAAGAAGAAGACAACATTACACCAACATATTCAACAAACTCACAAGAAAAAAGCAAACTGA] consensusID : consensus_3909#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [CCGCGGACGCGTGGGTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTTATT] [+] EMBL BM620947 [CCGCGGACGCGTGGGTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3909#0 --------CCGCTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGC 52 consensus_3909#2 -----CCGCGGACGCGTGGGTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGC 55 consensus_3909#1 GTTGGCTGCACTC-CGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGC 59 * ** **************************************** consensus_3909#0 CTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTC 112 consensus_3909#2 CTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTC 115 consensus_3909#1 CTCCGACATTTGCAAACCCTCGTACAGGT-GTGTCTGT----------GTGAGTTTATTT 108 ***************************** * * ** * * * **** ** consensus_3909#0 TACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAAT-AGTCCGCGGGCGTCCGCGCG 171 consensus_3909#2 TACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAAT-AGTCCGCGGGCGTCCGCGCG 174 consensus_3909#1 ATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTG-CAGTGCA 167 **** * * * * * ** ***** *** *** * * * * ** consensus_3909#0 GCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCT 231 consensus_3909#2 GCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCT 234 consensus_3909#1 AAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATA-AACACAAAATAAAGCGT 226 * * ***** * * * * * * * * * ** * consensus_3909#0 GTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCC---GTGTTTGTGTACGTGTGTGT 288 consensus_3909#2 GTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCC---GTGTTTGTGTACGTGTGTGT 291 consensus_3909#1 ACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGT 286 * * * * *** * *** * * * * * * ** consensus_3909#0 CTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTA 348 consensus_3909#2 CTGTGTGAGTTTATT--------------------------------------------- 306 consensus_3909#1 CCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGG 346 * ** **** consensus_3909#0 TGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAAC 408 consensus_3909#2 ------------------------------------------------------------ consensus_3909#1 CGGCTATTTATTTATTCTACCCTTTAAATGTGTTGCTAACGCGTGTGAAAGGCTGCTCGC 406 consensus_3909#0 ACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATAT 468 consensus_3909#2 ------------------------------------------------------------ consensus_3909#1 GGTGGGGGACGACCGGCACTAGTCGATTGGTGTAATAGTAGAAAATATAAAACAAAGAAG 466 consensus_3909#0 TATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACC 528 consensus_3909#2 ------------------------------------------------------------ consensus_3909#1 AAGACAACATTACACCAACATATTCAACAAACTCACAAGAAAAAAGCAAACTGA------ 520 consensus_3909#0 TCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTT 576 consensus_3909#2 ------------------------------------------------ consensus_3909#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||