These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGCAGAGTGTGTGCTTTTCCTTCCATTTATAGTGCAGACGCATACCCACCGCCCAAGAAAGAAAAACAGTGCTCATTTTCCCGACGTACACACTAGCGTGCCGCTTCCCGATTCCTTTACCCACCCGCTCGGGGGAGGGGCAGGGCTCGGATCGTTCGTGCCAAGTGTACCATCCCGCACGGCGCAACAATGTCCACCAACAGCGGCGGCGGAAGCGTTGGCAGCGGGGCACACTTCCCCGCGAGTGCAGCTGCTGCACCTATCCACGCGCGTCCGCAGCCGGGAGGAGCAGGAGCTGGAGCGGCTGCGGCAAACGCCAACGCAAACGCTCATCAACTGCTTCATGCTCGGGTGGTTCATCATCGGTTCGTTCTGGATCTACCAGATCTACGAGCCGAACTACGACCCGGCGCTCGGCAAGTACTGCAACAAATCCCTGTACCTGTTCACCTTCTGGCTGATCACCTCCGTCTACATGATGCTGTTCGTCGTCACGATCGTGCTGTGCAGCGTTAGCATCATAAGCCTTTGCTTTCACCGGCAAACCTAGCCGGTGGTGCTGCTGCCGTCGCCCCACCTGACCCACCATGCGCAACGCTAGCGGGCAGGTGCG] [+] EMBL BM600843 [CCGCAGAGTGTGTGCTTTTCCTTCCATTTATAGTGCAGACGCATACCCACCGCCCAAGAAAGAAAAACAGTGCTCATTTTCCCGACGTACACACTAGCGTGCCGCTTCCCGATTCCTTTACCCACCCGCTCGGGGGAGGGGCAGGGCTCGGATCGTTCGTGCCAAGTGTACCATCCCGCACGGCGCAACAATGTCCACCAACAGCGGCGGCGGAAGCGTTGGCAGCGGGGCACACTTCCCCGCGAGTGCAGCTGCTGCACCTATCCACGCGCGTCCGCAGCCGGGAGGAGCAGGAGCTGGAGCGGCTGCGGCAAACGCCAACGCAAACGCTCATCAACTGCTTCATGCTCGGGTGGTTCATCATCGGTTCGTTCTGGATCTACCAGATCTACGAGCCGAACTACGACCCGGCGCTCGGCAAGTACTGCAACAAATCCCTGTACCTGTTCACCTTCTGGCTGATCACCTCCGTCTACATGATGCTGTTCGTCGTCACGATCGTGCTGTGCAGCGTTAGCATCATAAGCCTTTGCTTTCACCGGCAAACCTAGCCGGTGGTGCTGCTGCCGTCGCCCCACCTGACCCACCATGCGCAACGCTAGCGGGCAGGTGCG] consensusID : consensus_3911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [CCGCCCACGCGTCCGATCATTTTCATGTTTTGGGGAAACGAAAAGAAAAACAACAAACGAAACAACAACCGAACTGCAGAGACGAGAGAGAGTGCCACAGAGTGTGTGCTTTTCCTTCCATTTATAGTGCAGACGCATACCCACCGCCCAAGAAAGAAAAACAGTGCTCATTTTCCCGACGTACACACTAGTGTGCCGCTTCCCGATTCCTTTACCCACCCGCTCGGGGGAGGGGCAGGGCTCGGATCGTTCGTGCCAAGTGTACCATCCCGCACGGCGCAACAATGTCCACCAACAGCGGCGGCGGAAGCGTTGGCAGCGGGGCACACTTCCCCGCGAGTGCAGCCGTATCGAACTACCACGACATCTACGTTCAACAGCAACCTAGCGGCGCCGGTGGCCACGACGAGCTGGACAGCATAAACAGCATCGCCCCGGTACCACCACCACCCGTTTCGCAACCCACAGTGATAGTGGCGGGTTTACAGTCGTCACAGGCGAAGGGTGGTGGGTTGGTTGGTGGCCCTGCGAGCAGCAGTTCGCTCTACTTCCCGACCGCCCCCCCGCCCGTCCCGTACAGTGAGCTGGGCGAACCGAGCGGCAACGTGGGGCGG] [+] EMBL BM648994 [CCGCCCACGCGTCCGATCATTTTCATGTTTTGGGGAAACGAAAAGAAAAACAACAAACGAAACAACAACCGAACTGCAGAGACGAGAGAGAGTGCCACAGAGTGTGTGCTTTTCCTTCCATTTATAGTGCAGACGCATACCCACCGCCCAAGAAAGAAAAACAGTGCTCATTTTCCCGACGTACACACTAGTGTGCCGCTTCCCGATTCCTTTACCCACCCGCTCGGGGGAGGGGCAGGGCTCGGATCGTTCGTGCCAAGTGTACCATCCCGCACGGCGCAACAATGTCCACCAACAGCGGCGGCGGAAGCGTTGGCAGCGGGGCACACTTCCCCGCGAGTGCAGCCGTATCGAACTACCACGACATCTACGTTCAACAGCAACCTAGCGGCGCCGGTGGCCACGACGAGCTGGACAGCATAAACAGCATCGCCCCGGTACCACCACCACCCGTTTCGCAACCCACAGTGATAGTGGCGGGTTTACAGTCGTCACAGGCGAAGGGTGGTGGGTTGGTTGGTGGCCCTGCGAGCAGCAGTTCGCTCTACTTCCCGACCGCCCCCCCGCCCGTCCCGTACAGTGAGCTGGGCGAACCGAGCGGCAACGTGGGGCGG] [+] EMBL BM628377 [ ccgCAAGAAAGAAAAACAGTGCTCATTTTCCCGACGTACACACTAGTGTGCCGCTTCCCGATTCCTTTACCCACCCGCTCGGGGGAGGGGCAGGGCTCGGATCGTTCGTGCCAAGTGTACCATCCCGCACGGCGCAACAATGTCCACCAACAGCGGCGGCGGAAGCGTTGGCAGCGGGGCACACTTCCCCGCGAGTGCAGCCGTATCGAACTACCACGACATCTACGTTCAACAGCAACCTAGCGGCGCCGTTGGCCACGACGAGCTGGACAGCATAAACAGCATCGCCCCGGTACCACCACCACCCGTTTCGCAACCCACAGTGATAGTGGCGGGTCTACAGTCGTCACAGGCGA GG GGTGG TGGTGGCCCTCCGAGCACCAGTTCGCTCTACTTCCCGACCGCCCCCCCGCCCGTCCCGTACAGTGAGCTGGGCGAACCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3911#0 ------------------------------------------------------------ consensus_3911#1 CCGCCCACGCGTCCGATCATTTTCATGTTTTGGGGAAACGAAAAGAAAAACAACAAACGA 60 consensus_3911#0 ----------------------------------CCGCAGAGTGTGTGCTTTTCCTTCCA 26 consensus_3911#1 AACAACAACCGAACTGCAGAGACGAGAGAGAGTGCCACAGAGTGTGTGCTTTTCCTTCCA 120 ** *********************** consensus_3911#0 TTTATAGTGCAGACGCATACCCACCGCCCAAGAAAGAAAAACAGTGCTCATTTTCCCGAC 86 consensus_3911#1 TTTATAGTGCAGACGCATACCCACCGCCCAAGAAAGAAAAACAGTGCTCATTTTCCCGAC 180 ************************************************************ consensus_3911#0 GTACACACTAGCGTGCCGCTTCCCGATTCCTTTACCCACCCGCTCGGGGGAGGGGCAGGG 146 consensus_3911#1 GTACACACTAGTGTGCCGCTTCCCGATTCCTTTACCCACCCGCTCGGGGGAGGGGCAGGG 240 *********** ************************************************ consensus_3911#0 CTCGGATCGTTCGTGCCAAGTGTACCATCCCGCACGGCGCAACAATGTCCACCAACAGCG 206 consensus_3911#1 CTCGGATCGTTCGTGCCAAGTGTACCATCCCGCACGGCGCAACAATGTCCACCAACAGCG 300 ************************************************************ consensus_3911#0 GCGGCGGAAGCGTTGGCAGCGGGGCACACTTCCCCGCGAGTGCAGCTGCTGCACCTATCC 266 consensus_3911#1 GCGGCGGAAGCGTTGGCAGCGGGGCACACTTCCCCGCGAGTGCAGCCGTATCGAACTACC 360 ********************************************** * * ** consensus_3911#0 ACGCGCGTCCGCAGCCGGGAGGAGCAGGAGCTGGAGCGGCTGCGGCAAACGCCAACGCAA 326 consensus_3911#1 ACG-ACATCTACGTTCAACAGCAAC-----CTAGCGGCGCCGGTGGCCACGACGAGCTGG 414 *** * ** * * ** * * ** * * ** * * *** * * consensus_3911#0 ACGCTCATCAACTGCTTCATGCTCGGGTGGTTCATCATCGGTTCGTTCTGGATCTACCAG 386 consensus_3911#1 ACAG-CATAAACAGCATC--GCCCCGGTA--CCACCACCA-CCCGTTTCGCAACCCACAG 468 ** *** *** ** ** ** * *** ** ** * **** * * * *** consensus_3911#0 ATCTACGAGCCGAACTACGACCCGGCGCTCGGCAAGTACTGCAACAAATCCCTGTACCTG 446 consensus_3911#1 TGATAGTGGCGGGTTTACAGTC--GTCACAGGCGA--AGGGTGGTGGGT-----TGGTTG 519 ** ** * *** * * *** * * * * * ** consensus_3911#0 TTCACCTTCTGGCTGATCACCTCCGTCTACATGATGCTGTTCGTCGTCACGATCGTGCTG 506 consensus_3911#1 GTGGCCCTGCGAGCAG-CAGTTCGCTCTACTTC---CCGACCGCCCCCCCGCCCGTCCCG 575 * ** * * ** ** ***** * * * ** * * ** *** * * consensus_3911#0 TGCAGCGTTAGCATCATAAGCCTTTGCTTTCACCGGCAAACCTAGCCGGTGGTGCTGCTG 566 consensus_3911#1 TACAGTG--AGCTGGGCGAACCG--------AGCGGCAACGTGGGGCGG----------- 614 * *** * *** * ** * ****** * *** consensus_3911#0 CCGTCGCCCCACCTGACCCACCATGCGCAACGCTAGCGGGCAGGTGCG 614 consensus_3911#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||