These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1112 fasta sequence [CGAGGTTTAGCAGGCGTTTTGCTGCTGCTGTCATAGCGGGGTGTNAGGGATTTCAAGTCTATTCATGAAGTGAAGTCGTTCATATTGACTGGATGCGTGTTCTAGCTGTCCATTTTTTCCTTCCTCTCGCTAGAATTCCTGTGCCAGTAAAATCACCATCGTCCATCGCTTCCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCGATCGTAGGCTGCCACGGGCAGCGAGGGCGGACCTGGAACCACTATGCGTTCACTCGAGAGCACCTGGGGCGAGCGCAAAGATACTGCTGCACAGATNAATCGTGTTCAGGCCGCTGTAACAACACGGCCCCTCAGCTATCCTGTCCGGAGATCGACCAGAGGTGGCTGGCCAGAGAGACGGCACCATATCCGCGCCTGGGACGCGGNCCTGGCAAACGATATACCATGANAGAANACCAGGCTGGGNCAAGTCTGCGCACCGNNGGGGCGGGTGCGATCGGGGTTTCCAGCCTAGCCGCGTGNCCGNGTGANTCNCCCCATTTTCGCTGTTTGGCNGCANCTGGCTGGGTGCTGGNCCCCGCCGCTATAGCCGGTCGCCGGTTGCGGGTNCGGCNNCGCTTNCTGGCTGCGCGCGTCCCCCGCTTCGCCCNCTCCCGTCCCGCGGCTGCGCTGTCGCNCGCTCCCGTCGCCGCGGCCCTCCTCCCNGCCCCTGNNGGNGCCCNACCNACCCATGCAAGCACACGCCNCGNGAGGAACACCCAACAGGNGTACCCAGCGCACGNGANGGCCTGNGCACGGGCANTCGCCCATCACNCACGGGCCGCCNNGGGNCCCCGNCCCTNCCACGCGCCGCCCGAGANAACCAAGGCNACCGCACAGGNACGTCCGGCGGCAATCANNGCCGCGACNACCGAAGACGGGGCNCGAACCNAGAACNATCGANAGCCGNCACAAAAACGGGGGGGGCAGCANCACGGTGANGANNAAACNGACNGCCCCGGAAAGCANGACANGNCGNCNNGGAGCNCGAGCAGGGGGCCGACCACGNGCCAGCACACGNGGAGGAAAGACGCGCGCCCACNCCCTG] [+] EMBL AL696022 [CGAGGTTTAGCAGGCGTTTTGCTGCTGCTGTCATAGCGGGGTGTNAGGGATTTCAAGTCTATTCATGAAGTGAAGTCGTTCATATTGACTGGATGCGTGTTCTAGCTGTCCATTTTTTCCTTCCTCTCGCTAGAATTCCTGTGCCAGTAAAATCACCATCGTCCATCGCTTCCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCGATCGTAGGCTGCCACGGGCAGCGAGGGCGGACCTGGAACCACTATGCGTTCACTCGAGAGCACCTGGGGCGAGCGCAAAGATACTGCTGCACAGATNAATCGTGTTCAGGCCGCTGTAACAACACGGCCCCTCAGCTATCCTGTCCGGAGATCGACCAGAGGTGGCTGGCCAGAGAGACGGCACCATATCCGCGCCTGGGACGCGGNCCTGGCAAACGATATACCATGANAGAANACCAGGCTGGGNCAAGTCTGCGCACCGNNGGGGCGGGTGCGATCGGGGTTTCCAGCCTAGCCGCGTGNCCGNGTGANTCNCCCCATTTTCGCTGTTTGGCNGCANCTGGCTGGGTGCTGGNCCCCGCCGCTATAGCCGGTCGCCGGTTGCGGGTNCGGCNNCGCTTNCTGGCTGCGCGCGTCCCCCGCTTCGCCCNCTCCCGTCCCGCGGCTGCGCTGTCGCNCGCTCCCGTCGCCGCGGCCCTCCTCCCNGCCCCTGNNGGNGCCCNACCNACCCATGCAAGCACACGCCNCGNGAGGAACACCCAACAGGNGTACCCAGCGCACGNGANGGCCTGNGCACGGGCANTCGCCCATCACNCACGGGCCGCCNNGGGNCCCCGNCCCTNCCACGCGCCGCCCGAGANAACCAAGGCNACCGCACAGGNACGTCCGGCGGCAATCANNGCCGCGACNACCGAAGACGGGGCNCGAACCNAGAACNATCGANAGCCGNCACAAAAACGGGGGGGGCAGCANCACGGTGANGANNAAACNGACNGCCCCGGAAAGCANGACANGNCGNCNNGGAGCNCGAGCAGGGGGCCGACCACGNGCCAGCACACGNGGAGGAAAGACGCGCGCCCACNCCCTG] consensusID : consensus_3912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGGAAGAAAACACCACCCCAAAAAGCTCGCCCGTTCCACCCCCAAACCGCACCAGACCTGTTTGCTAGGACGGGCAAGTTCAACCCGATAAATAGGAAACGCTAAAGAAGGGCACGCAAACGCGAAAAACGGTGGCGAAGGAGGGTAAAGTTGTTAAACAAGAAAGTGGGAAAAACAAGTGCGCGTCGCTCGGGTCTGCAGTACGTTTTGTACCGTTGCGTCTACTCGTACGCAAAGCAAAGCAAAGAAGGGGGAAACGGTACAAATAGAAGAATTCTTGTGCCAGTAAAATCACCATCGTCCATCGCTTCCCCACGCCCCATCGTAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCCGATCGTAGCTGCCACGGGCAGCGAGGGCGGCACCTGGAACCACTATGCGTTCATCGAGAGCACCTGGGGCGAGCGCAAGATACTGCTGAAGATAATCGTGTTCAGCCCGCTGTACAACACGCCCCTCAGCTTCCTGTCCGAGATCGACCACGAGGTGCTGCAGCAGACGGCCATTCGGCTGGAGCGGCCCTGGAACGATTTCCTGCACGAGACCAAACTGGCACTCTGCACCGAGGGCGGCGCGAACGGGTTTCAGCTACGCGGTCGAGGAGAACAATTTCGTGTGGCGCAAGGTGGTGGGGC] [+] EMBL BM603294 [CCGGAAGAAAACACCACCCCAAAAAGCTCGCCCGTTCCACCCCCAAACCGCACCAGACCTGTTTGCTAGGACGGGCAAGTTCAACCCGATAAATAGGAAACGCTAAAGAAGGGCACGCAAACGCGAAAAACGGTGGCGAAGGAGGGTAAAGTTGTTAAACAAGAAAGTGGGAAAAACAAGTGCGCGTCGCTCGGGTCTGCAGTACGTTTTGTACCGTTGCGTCTACTCGTACGCAAAGCAAAGCAAAGAAGGGGGAAACGGTACAAATAGAAGAATTCTTGTGCCAGTAAAATCACCATCGTCCATCGCTTCCCCACGCCCCATCGTAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCCGATCGTAGCTGCCACGGGCAGCGAGGGCGGCACCTGGAACCACTATGCGTTCATCGAGAGCACCTGGGGCGAGCGCAAGATACTGCTGAAGATAATCGTGTTCAGCCCGCTGTACAACACGCCCCTCAGCTTCCTGTCCGAGATCGACCACGAGGTGCTGCAGCAGACGGCCATTCGGCTGGAGCGGCCCTGGAACGATTTCCTGCACGAGACCAAACTGGCACTCTGCACCGAGGGCGGCGCGAACGGGTTTCAGCTACGCGGTCGAGGAGAACAATTTCGTGTGGCGCAAGGTGGTGGGGC] consensusID : consensus_3912#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CGTGTCTGTGTCATTTTTTCTTCTCTCGCTAGAATTCTGTGCCAGTAAAATACATCGTCCATCGCTTCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCGATCGCTAGCTGGCACGAGGACAGCGAGGGCGGCGACCCTGGCAGACCACTATGCGGTTCACTCGCACGAGCACCCCTGGAGAGGAGAGACGCAAGAATACATGGCTGCAACGCACTACACTCCGCTGTANCANGCCCCGGACCTGNATAACAAAACCAAACGGGCGCCCACATCAGACCATATNCCCTTGCATACNGGAAACGCAACGTTCGGNNACCCCACACACAATCCGCGNNGCCAATGGCAAAGAGCACAAGANAAAACGGGGCACCCACATNCTCCGACGCCCNTTGGTGCAACGNCCGGCGCAGCACCACTTGGCGGAAANACCGGGAACTTTNAATCCCCATTGGCTCANAACCGGATANGAAAACCCCCAAACGNGACCCCTNGGGGACACAAACCCATTCCCGTGGGCCAAACCCCGTGACACACANCNGGAGCGCGTNAGGCTAGGCCACGGCAAACACCCGGGCGCGCGCATTATNCCAAAGGCNCCATTAAACCGAGCCCGGNGTATCCGGNGCAATGGTGGGCGAGTGGGAANA] [+] EMBL AL695800 [CGTGTCTGTGTCATTTTTTCTTCTCTCGCTAGAATTCTGTGCCAGTAAAATACATCGTCCATCGCTTCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCGATCGCTAGCTGGCACGAGGACAGCGAGGGCGGCGACCCTGGCAGACCACTATGCGGTTCACTCGCACGAGCACCCCTGGAGAGGAGAGACGCAAGAATACATGGCTGCAACGCACTACACTCCGCTGTANCANGCCCCGGACCTGNATAACAAAACCAAACGGGCGCCCACATCAGACCATATNCCCTTGCATACNGGAAACGCAACGTTCGGNNACCCCACACACAATCCGCGNNGCCAATGGCAAAGAGCACAAGANAAAACGGGGCACCCACATNCTCCGACGCCCNTTGGTGCAACGNCCGGCGCAGCACCACTTGGCGGAAANACCGGGAACTTTNAATCCCCATTGGCTCANAACCGGATANGAAAACCCCCAAACGNGACCCCTNGGGGACACAAACCCATTCCCGTGGGCCAAACCCCGTGACACACANCNGGAGCGCGTNAGGCTAGGCCACGGCAAACACCCGGGCGCGCGCATTATNCCAAAGGCNCCATTAAACCGAGCCCGGNGTATCCGGNGCAATGGTGGGCGAGTGGGAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3912#0 ------------------------------------------------------------ consensus_3912#1 CCGGAAGAAAACACCACCCCAAAAAGCTCGCCCGTTCCACCCCCAAACCGCACCAGACCT 60 consensus_3912#2 ------------------------------------------------------------ consensus_3912#0 ------------------------------------------------------------ consensus_3912#1 GTTTGCTAGGACGGGCAAGTTCAACCCGATAAATAGGAAACGCTAAAGAAGGGCACGCAA 120 consensus_3912#2 ------------------------------------------------------------ consensus_3912#0 ---CGAGGTTTAGCAG-GCGTTTTGCTGCTGCTGTCATAGCGGGGTGTNAGGGATTTCAA 56 consensus_3912#1 ACGCGAAAAACGGTGGCGAAGGAGGGTAAAGTTGTTA-AACAAGAAAGTGGGAAAAACAA 179 consensus_3912#2 ------------------------------------------------------------ consensus_3912#0 GTCTAT-TCATGAAGTGAAGTCGTTCATATTGACTGGATGCGTGTTCTAGCTGTCCATTT 115 consensus_3912#1 GTGCGCGTCGCTCGGGTCTGCAGTACGTTTTGTACCGTTGCGTCTACTCGTACGCAAAGC 239 consensus_3912#2 ----------------------------------------CGTGTCTGTGT----CATTT 16 *** * * * consensus_3912#0 TTTCCT----------------TCCTCTCGCTAGAATTCCTGTGCCAGTAAAATCACCAT 159 consensus_3912#1 AAAGCAAAGAAGGGGGAAACGGTACAAATAGAAGAATTCTTGTGCCAGTAAAATCACCAT 299 consensus_3912#2 TTTCTT------------------CTCTCGCTAGAATTC-TGTGCCAGTAAAATA--CAT 55 * ******* ************** *** consensus_3912#0 CGTCCATCGCTTCCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGG 219 consensus_3912#1 CGTCCATCGCTTCCCCACGCCCCATCGTAGTGCATGCCACAGATACAGGAATGGAGCTGG 359 consensus_3912#2 CGTCCATCGCTTCCC-ACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGG 114 *************** *********** ******************************** consensus_3912#0 ATAATATATATCTGAACAAGCTGC-GATCGTAGGCTGCCACGGG--CAGCGAGGGCGG-A 275 consensus_3912#1 ATAATATATATCTGAACAAGCTGCCGATCGTAG-CTGCCACGGG--CAGCGAGGGCGGCA 416 consensus_3912#2 ATAATATATATCTGAACAAGCTGC-GATCGCTAGCTGGCACGAGGACAGCGAGGGCGGCG 173 ************************ ***** *** **** * ************ consensus_3912#0 --CCTGG--AACCACTATGCG-TTCACTCGA--GAGCACCTGGGGCGAGCGCAAAGATAC 328 consensus_3912#1 --CCTGG--AACCACTATGCG-TTCA-TCGA--GAGCACCTGGGGCGAGCGCAA-GATAC 467 consensus_3912#2 ACCCTGGCAGACCACTATGCGGTTCACTCGCACGAGCACCCCTGGAGAGGAGAGACGCAA 233 ***** *********** **** *** ******* ** *** * * consensus_3912#0 TGCTGCACAGATNAATCGTGTT-CAGGCCGCTGTAACAA--CACGGCCCCTCA--GCTAT 383 consensus_3912#1 TGCTG---AAGATAATCGTGTT-CAGCCCGCTGTA-CAA--CACG-CCCCTCA--GCT-T 516 consensus_3912#2 GAATACATGGCTGCAACGCACTACACTCCGCTGTANCANGCCCCGGACCTGNATAACAAA 293 * * ** * ** ******** ** * ** ** * * consensus_3912#0 CCTGTCCGG------AGATC-GACCAGAGGTGGCTGGCCAGAGAGACGGCACCATATCCG 436 consensus_3912#1 CCTGTCCG-------AGATC-GACCACGAGGTGCTG--CAGC-AGACGGC----CATTCG 561 consensus_3912#2 ACCAAACGGGCGCCCACATCAGACCATATNCCCTTGCATACNGGAAACGCAACGTTCGGN 353 * ** * *** ***** ** * * ** consensus_3912#0 CGCCTGGGACGCGGNCCTGGCAAACGATATACCATGANAGAANACCAGGCTGGGNCAAGT 496 consensus_3912#1 --GCTGGA--GCGGCCCTGG--AACGATTTCCT---GCACGAGACCAAACTGGCAC---- 608 consensus_3912#2 NACCCCACACACAATCCGCGNNGCCAATGGCAAAGAGCACAAGANAAAAC-GGGGCACCC 412 * * ** * * ** * * * * * ** * consensus_3912#0 CTGCGCACCGNNGGGGCGGGTGCGATCGGGGTTTCCAGCCTAGCCGCGTGNCCGNGTGAN 556 consensus_3912#1 -TCTGCACCGAGGGCG---GCGCGAACGGGTTTC-------AGCTACGCGGTCGAGGAGA 657 consensus_3912#2 ACATNCTCCGACGCCC---NTTGGTGCAACGNCCGGCGCAGCACCACTTGGCGGAAANAC 469 * *** * * * * * * * consensus_3912#0 TCNCCCCATTTTCGCTGTTTGGCNGCANCTGGCTGGGTGCTGGNCCCCGCCGCTATAGCC 616 consensus_3912#1 ACA----ATTTC----GTGTGGCGCAAGGTGGTGGGGC---------------------- 687 consensus_3912#2 CGGG--AACTTTNAATCCCCATTGGCTCANAACCGGATANGAAAACCCCCAAACGNGACC 527 * ** ** consensus_3912#0 GGTCGCCGGTTGCGGGTNCGGCNNCGCTTNCTGGCTGCGCGCGTCCCCCGCTTCGCCCNC 676 consensus_3912#1 ------------------------------------------------------------ consensus_3912#2 CCTNG---------GGGACACAAACCCATTCCCGTGGGCCAAACCCCGTGACACACANCN 578 consensus_3912#0 TCCCGTCCCGCGGCTGCGCTGTCGCNCGCTCCCGTCGCCGCGGCCCTCCTCCCNGCCCCT 736 consensus_3912#1 ------------------------------------------------------------ consensus_3912#2 GGAGCGCGTNAGGCTAGGCCACGGCAAACACCCGGGCGCGCGCATTATNCCAAAGGCNCC 638 consensus_3912#0 GNNGGNGCCCNACCNACCCATGCAAGCACACGCCNCGNGAGGAACACCCAACAGGNGTAC 796 consensus_3912#1 ------------------------------------------------------------ consensus_3912#2 ATTAAACCGAGCCCGGNGTATCCGGNGCAATGGTGGGCGAGTGGGAANA----------- 687 consensus_3912#0 CCAGCGCACGNGANGGCCTGNGCACGGGCANTCGCCCATCACNCACGGGCCGCCNNGGGN 856 consensus_3912#1 ------------------------------------------------------------ consensus_3912#2 ------------------------------------------------------------ consensus_3912#0 CCCCGNCCCTNCCACGCGCCGCCCGAGANAACCAAGGCNACCGCACAGGNACGTCCGGCG 916 consensus_3912#1 ------------------------------------------------------------ consensus_3912#2 ------------------------------------------------------------ consensus_3912#0 GCAATCANNGCCGCGACNACCGAAGACGGGGCNCGAACCNAGAACNATCGANAGCCGNCA 976 consensus_3912#1 ------------------------------------------------------------ consensus_3912#2 ------------------------------------------------------------ consensus_3912#0 CAAAAACGGGGGGGGCAGCANCACGGTGANGANNAAACNGACNGCCCCGGAAAGCANGAC 1036 consensus_3912#1 ------------------------------------------------------------ consensus_3912#2 ------------------------------------------------------------ consensus_3912#0 ANGNCGNCNNGGAGCNCGAGCAGGGGGCCGACCACGNGCCAGCACACGNGGAGGAAAGAC 1096 consensus_3912#1 ------------------------------------------------------------ consensus_3912#2 ------------------------------------------------------------ consensus_3912#0 GCGCGCCCACNCCCTG 1112 consensus_3912#1 ---------------- consensus_3912#2 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||