These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 494 fasta sequence [CCGCGAAACTTTAGTATGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTGAATTGTAATGAAGATAAAACTGAGAGGGGATCGGATAGCGCATGTCCTTCCTCGGTTAGAGGGAAACCTAAATCGGGTAGGACATGGAAATCTCAAAAGTTACGATTTGCTTCTATTAAGAAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAGCATATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAACGTTTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATCGTACAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATGATTGAAAAACGGGACATCAGTAAATTAAATGTCGTCTAATGCATTACCCAAGACAATAAACAATTGGACCGTCATGT] [+] EMBL BM600821 [CCGCGAAACTTTAGTATGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTGAATTGTAATGAAGATAAAACTGAGAGGGGATCGGATAGCGCATGTCCTTCCTCGGTTAGAGGGAAACCTAAATCGGGTAGGACATGGAAATCTCAAAAGTTACGATTTGCTTCTATTAAGAAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAGCATATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAACGTTTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATCGTACAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATGATTGAAAAACGGGACATCAGTAAATTAAATGTCGTCTAATGCATTACCCAAGACAATAAACAATTGGACCGTCATGT] [+] EMBL BM606163 [ ccgGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTGAATTGTAATGAAGATAAAACTGAGAATGGATCGGATAGCGCATGTCCTTCCTCGGTTAGAGGGAAACCTAAATCGGGTAGGACATGGAAATCTCAAAAGTTACGATTTGCTTCTATTAAGAAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAGCATATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAACGTTTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATCGTACAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATGATTGAAAAACGGGACATCAGTAAATTAAATGTCGTC ] consensusID : consensus_3914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 120 fasta sequence [GTCCTACCCGATTTAGGTTTCCCTCTAACCGAGGAAGGACATGCGCTATCCGATCCATTCTCAGTTTTATCTTCATTACAATTCAATGATGACCCAGTAGGCCAACAGTGCTCGAGGAAT] [+] EMBL CNS08OKK [GTCCTACCCGATTTAGGTTTCCCTCTAACCGAGGAAGGACATGCGCTATCCGATCCATTCTCAGTTTTATCTTCATTACAATTCAATGATGACCCAGTAGGCCAACAGTGCTCGAGGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3914#0 CCGCGAAACTTTAGTATGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTG 60 consensus_3914#1 ------------------------------------------------------------ consensus_3914#0 AATTGTAATGAAGATAAAACTGAGAGGGGATCGGATAGCGCATGTCCTTCCTCGGTTAGA 120 consensus_3914#1 -------------------------------------------GTCCTACCCGATTTAGG 17 ***** ** **** consensus_3914#0 GGGAAACCTAAATCGGGTAGGACATG-GAAATCTCAAAAGTTACGA--TTTGCTTCTATT 177 consensus_3914#1 TTTCCCTCTAACCGAGGAAGGACATGCGCTATCCGATCCATTCTCAGTTTTATCTTCATT 77 **** ** ******** * *** * ** * *** * *** consensus_3914#0 AAGAAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAG 237 consensus_3914#1 ACAATTCAATGATGACCCAGTAGGCCAACAGTGCTCGAGGAAT----------------- 120 * * * * * * * ** ** ** * * ** consensus_3914#0 CATATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAA 297 consensus_3914#1 ------------------------------------------------------------ consensus_3914#0 CGTTTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATC 357 consensus_3914#1 ------------------------------------------------------------ consensus_3914#0 GTACAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATG 417 consensus_3914#1 ------------------------------------------------------------ consensus_3914#0 ATTGAAAAACGGGACATCAGTAAATTAAATGTCGTCTAATGCATTACCCAAGACAATAAA 477 consensus_3914#1 ------------------------------------------------------------ consensus_3914#0 CAATTGGACCGTCATGT 494 consensus_3914#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||