These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1077 fasta sequence [AGATNGCCCCAGGATTAAACTCCCNATGANNNGCTANAGTGCCCTTCAAGATTATTCATCTTGCAAGTAGTATATAGGACCTGATCTGGAAGCAGGTATAAAGCAGGTGTACAAACGGGAGCTCAGTNTTGGGCATCGCACGCTTAACATGGCAACTCTANCACACATNGTCTANCAATTACTTGTACTGAGNTGTTGCACCAGCTATGAGGCCAACTCTGCTNCACTGTGGCTCGGTCGACANGNTATCTGAAGAAAAGTGGGATCAGGTGCACCTGGCGGGGNGTGNTGCCCAGACTGGTCTGGCCAGTGAGCTGTNCANTNAGGGTTGNAAGAGAGTTTACTCGGAGCAAACTAACCGTNCGTTAGCACGAGTGATGCGACCCCAGAAATTGCGGGCATCCGGATCCTAGCATTGTGCACGCGCCACAGTGGCACAAGTTNGNTAGAAAGCCTATCTAAANAAACAAAGNCCTGCCTTGNGGGCACTGCAGGTCATTCCCAGGTTCTTCCGCAGNCCAAAGGGTTGCCTNGGACANNGGGATGGNANCNTANNAAGTAGGCCCTAAACGCCGTGNGANACCCAGGGACCACTATGTAGTAGCTGAAANANTCCGGCCGGAAAGCTNGATTNACAGATGGCACGAGTGNGTCCCCTNCAAANAAGGGGGGAAGCTGCTTGGCTACCNGGCAAGAAGTTCTTAACCCCCACGTNACATGTNAACGGGCCTGGGAATTGCAGCCCNTGGACAGTCNCTCGGCGNACACNACGACTGGTNTACGACACNGACNACATACNCTTGGAACNAAACNCACAATGGCCCAAGCGGTNNAACANACAGGCACAACCGGCATCACTGTAGGCCANTCTNGAANACNCGGAGACGTNTGGAAGTGAACGGAACNGGCGGCCCGAAGCACCGCCACCACTNTGCGGGGGGAANAACACAGGTAAGTACCCNAAACATATACCCCAGCCGNNAACAGCCAGGGATTGTTCCCCACGCGCGCATNGTCNACCACTACCGACAACTTATGGTANTGTAAACACAGCAGTACACAGAAGCGCCTCACNAG] [+] EMBL AL696012 [AGATNGCCCCAGGATTAAACTCCCNATGANNNGCTANAGTGCCCTTCAAGATTATTCATCTTGCAAGTAGTATATAGGACCTGATCTGGAAGCAGGTATAAAGCAGGTGTACAAACGGGAGCTCAGTNTTGGGCATCGCACGCTTAACATGGCAACTCTANCACACATNGTCTANCAATTACTTGTACTGAGNTGTTGCACCAGCTATGAGGCCAACTCTGCTNCACTGTGGCTCGGTCGACANGNTATCTGAAGAAAAGTGGGATCAGGTGCACCTGGCGGGGNGTGNTGCCCAGACTGGTCTGGCCAGTGAGCTGTNCANTNAGGGTTGNAAGAGAGTTTACTCGGAGCAAACTAACCGTNCGTTAGCACGAGTGATGCGACCCCAGAAATTGCGGGCATCCGGATCCTAGCATTGTGCACGCGCCACAGTGGCACAAGTTNGNTAGAAAGCCTATCTAAANAAACAAAGNCCTGCCTTGNGGGCACTGCAGGTCATTCCCAGGTTCTTCCGCAGNCCAAAGGGTTGCCTNGGACANNGGGATGGNANCNTANNAAGTAGGCCCTAAACGCCGTGNGANACCCAGGGACCACTATGTAGTAGCTGAAANANTCCGGCCGGAAAGCTNGATTNACAGATGGCACGAGTGNGTCCCCTNCAAANAAGGGGGGAAGCTGCTTGGCTACCNGGCAAGAAGTTCTTAACCCCCACGTNACATGTNAACGGGCCTGGGAATTGCAGCCCNTGGACAGTCNCTCGGCGNACACNACGACTGGTNTACGACACNGACNACATACNCTTGGAACNAAACNCACAATGGCCCAAGCGGTNNAACANACAGGCACAACCGGCATCACTGTAGGCCANTCTNGAANACNCGGAGACGTNTGGAAGTGAACGGAACNGGCGGCCCGAAGCACCGCCACCACTNTGCGGGGGGAANAACACAGGTAAGTACCCNAAACATATACCCCAGCCGNNAACAGCCAGGGATTGTTCCCCACGCGCGCATNGTCNACCACTACCGACAACTTATGGTANTGTAAACACAGCAGTACACAGAAGCGCCTCACNAG] consensusID : consensus_3921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGCTGAAAGAAAGTCATCTTTCGACCCGAAACGGCTTCTTTCTTTCTCGTTACTGTGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACACACATGTCTACAATTACTGTACGAGTGTCCACCAGCAGCCCAACTCGCGCACGGGCTCGTCGAAGATATCGAAAAAAGGCATCAGCGCACCGCCGGGCGGGGCCCAGTTGGTCGGCCAGGAGCTGTACAAACGGGTTGAAGGAGTTTCTC] [+] EMBL BM594224 [CCGCTGAAAGAAAGTCATCTTTCGACCCGAAACGGCTTCTTTCTTTCTCGTTACTGTGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACACACATGTCTACAATTACTGTACGAGTGTCCACCAGCAGCCCAACTCGCGCACGGGCTCGTCGAAGATATCGAAAAAAGGCATCAGCGCACCGCCGGGCGGGGCCCAGTTGGTCGGCCAGGAGCTGTACAAACGGGTTGAAGGAGTTTCTC] consensusID : consensus_3921#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CGACCCACGCGTCCGGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACAC] [+] EMBL BM657478 [CGACCCACGCGTCCGGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3921#1 ------------------------------------------------------------ consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 AGATNGCCCCAGGATTAAACTCCCNATGANNNGCTANAGTGCCCTTCAAGATTATTCATC 60 consensus_3921#1 ------------------------------------------------------------ consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 TTGCAAGTAGTATATAGGACCTGATCTGGAAGCAGGTATAAAGCAGGTGTACAAACGGGA 120 consensus_3921#1 ------------------------------------------------------------ consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 GCTCAGTNTTGGGCATCGCACGCTTAACATGGCAACTCTANCACACATNGTCTANCAATT 180 consensus_3921#1 ------------------------------------------------------------ consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 ACTTGTACTGAGNTGTTGCACCAGCTATGAGGCCAACTCTGCTNCACTGTGGCTCGGTCG 240 consensus_3921#1 ------------------------------------------------------------ consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 ACANGNTATCTGAAGAAAAGTGGGATCAGGTGCACCTGGCGGGGNGTGNTGCCCAGACTG 300 consensus_3921#1 --------------CCGCTGAAAGAAAGTCATCTTTCGACCCGAAACGGCTTCTTTCTTT 46 consensus_3921#2 -------------------------------------------------------CGACC 5 consensus_3921#0 GTCTGGCCAGTGAGCTGTNCANTNAGGGTTGNAAGAGAGTTTACTCGGAGCAAACTAACC 360 consensus_3921#1 -CTCGTTACTGTGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAA 105 consensus_3921#2 -CACGCGTCCG-GTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAA 63 consensus_3921#0 GTNCGTTAGCACGAGTGATGCGACCC-CAGAAATTGCGGGCATCCGGATCCTAGCATTGT 419 ** * * ** * * * *** **** ** * * ** *** consensus_3921#1 ACACCAACTGTGGGGCCCCAGTCGCGGTGGCCA---CATTCAGTCAGCCAAGAGCGTAGC 162 consensus_3921#2 ACACCAACTGTGGGGCCCCAGTCGCGGTGGCCA---CATTCAGTCAGCCAAGAGCGTAGC 120 consensus_3921#0 GCACGCGCCACAGTGGCACAAGTTNGNTAGAAAGCCTATCTAAANAAACAAAGNCCTGCC 479 *** * * * * ** * * * * ** * * *** * * * consensus_3921#1 AAATATCAGTCGATAATTACGACGAAA-----CGGAACGCCCTGGGTCTGTGCCTGGCTG 217 consensus_3921#2 AAATATCAGTCGATAATTACGACGAAA-----CGGAACGCCCTGGGTCTGTGCCTGGCTG 175 consensus_3921#0 TTGNGGGCACTGCAGGTCATTCCCAGGTTCTTCCGCAGNCCAAAGGGTTGCCTNGGACAN 539 * * * * * * * * ** ** ** * * consensus_3921#1 GTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGT 277 consensus_3921#2 GTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGT 235 consensus_3921#0 NGGGATGGNANCNTANNAAGTAGGCCCTAAACGCCGTGNGANACCCAGGGACCACTATGT 599 ** * * * ** ** * * * *** * * *** consensus_3921#1 AATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCC 337 consensus_3921#2 AATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCC 295 consensus_3921#0 AGTAGCTGAAANANTCCGGCCGGAAA-GCTNGATTNACAGATGGCACGAGTGNGTCCCCT 658 * * * **** * * * * * ** * ** * ** * * * consensus_3921#1 CTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGA----ATATTAAT 393 consensus_3921#2 CTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGA----ATATTAAT 351 consensus_3921#0 NCAAANAAGGGGGGAAGCTGCTTGGCTACCNGGCAAGAAGTTCTTAACCCCCACGTNACA 718 ** * * ** ** * * *** * * * * * * * * consensus_3921#1 CTTGAAGAGATATGGAC----CGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGA 449 consensus_3921#2 CTTGAAGAGATATGGAC----CGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGA 407 consensus_3921#0 TGTNAACGGGCCTGGGAATTGCAGCCCNTGGACAGTCNCTCGGCGNACACNACGACTGGT 778 * ** * *** * * * * ** ** ** consensus_3921#1 GCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACACACA-TGTCTACAATTACTGTA 508 consensus_3921#2 GCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACAC--------------------- 446 consensus_3921#0 NTACGACACNGACNACATACNCT---TGGAACNAAACNCACAATGGCCCAAGCGGTNNAA 835 * * * * ** ** ****** ** * consensus_3921#1 CGAGTGTCCACCAGCAGCCCAACTCGCGCACGGGCTCGTCGAAGATATCGAAAAAAGGCA 568 consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 CANACAGGCACAACCGGCATCACTGTAGGCCANTCTNGAANACNCGGAGACGTNTGGAAG 895 consensus_3921#1 TCAGCGCACCGCCGGGCGGGGCCCAGTTGGTCGGCCAGGAGCTGTACAAACGGGTTGAAG 628 consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 TGAACGGAACNGGCGGCCCGAAGCACCGCCACCACTNTGCGGGGGGAANAACACAGGTAA 955 consensus_3921#1 GAGTTTCTC--------------------------------------------------- 637 consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 GTACCCNAAACATATACCCCAGCCGNNAACAGCCAGGGATTGTTCCCCACGCGCGCATNG 1015 consensus_3921#1 ------------------------------------------------------------ consensus_3921#2 ------------------------------------------------------------ consensus_3921#0 TCNACCACTACCGACAACTTATGGTANTGTAAACACAGCAGTACACAGAAGCGCCTCACN 1075 consensus_3921#1 -- consensus_3921#2 -- consensus_3921#0 AG 1077 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||