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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3952#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1118 fasta sequence
[TCCNTAGCAGATTCCCGAGGTTATCTGAACGGAGCGCGTGTACGAGCACACATTNTGTATAGCGCAGCATCGCTGTGCGTGCTGTTCGACGATCTTTGTGTGCGCGTTTCGGGTGTTTCGTGTGCATTCGTGCGTGCGTGCGCTTGTATGGTAGTGTGTGCTTGTGTGGAAGCGAATGTCATCAGCTGTTGGGCTACCGCCCCGGTTCGAGGCGCATACGTGGTGCGGACGGGCGTGTGCTATCTTATCGCCGCGGGTGTGAGTGTGTCTGCAACGTGGGACTGTTGCAACAACAACGAAAAAAAAAACGAGAGAAAGAAACGGGGCCACAAGCCAATGGTGCCGCACTGTGCAGAGTTTTGTGCTAGCCGCGGGCCANTTTNCTTTGTCCCTCNGGTCGAGGGCAGGACGTGTTCCAAATCCAACCGGATGGGTAGTGGTGGTGGCTGGTCCGAAAAGGTTTACCGCCCCGGNTCATTGGCGAAAACGGGTCCCAAAAAGTTCCCCCCCAAATAAAGAAAGAAACANGGCATACAAGTCGGTTGGCCGTAAGCGTTTGCACCGATGGCAAATTGGCCGGTAGTTGTTTAATGTGGTTGACTTCACAAGGCGGCGACAACTTCAGTTAAACGTGGGTGGCATTTANCCGTTGCGCAATTGNGTTGGGACACCGGGACAGGGANAAAGGNCGNGGGGAAANAATTTCTTGACGACCGGGAAGCNANAGATTACGTGCGACTCAAACNACGNCACANTGGNGTTNTNCCAGAAACAGCGATGGCACTGAGGATTANNCAANAGGTGNTGCGGCACACCATATGTATAANAACGATANCGTATNTGACACGACCATGAATNAGAAAACNAATACCAAAAAGACTGTCCCNGAAATNGCTTTGNCGNACCGCAATTACNAAAACGGGNACAGGGTGAATTAGCAGNTGGACGAAANCAAACCAGGTCGAATCGCANCNACAGACANGACATNCNGGTTGAANTATCGATGCTCCACACGGTAAAAAAGGGCCANCANTGACTGAGTGTAACACAACACCGCANGTNACTGTAGTTGCTAGCACTACGTNATCCCTTCNCACANCACACNCTAGTGATATGAG]
[+] EMBL AL696531 [TCCNTAGCAGATTCCCGAGGTTATCTGAACGGAGCGCGTGTACGAGCACACATTNTGTATAGCGCAGCATCGCTGTGCGTGCTGTTCGACGATCTTTGTGTGCGCGTTTCGGGTGTTTCGTGTGCATTCGTGCGTGCGTGCGCTTGTATGGTAGTGTGTGCTTGTGTGGAAGCGAATGTCATCAGCTGTTGGGCTACCGCCCCGGTTCGAGGCGCATACGTGGTGCGGACGGGCGTGTGCTATCTTATCGCCGCGGGTGTGAGTGTGTCTGCAACGTGGGACTGTTGCAACAACAACGAAAAAAAAAACGAGAGAAAGAAACGGGGCCACAAGCCAATGGTGCCGCACTGTGCAGAGTTTTGTGCTAGCCGCGGGCCANTTTNCTTTGTCCCTCNGGTCGAGGGCAGGACGTGTTCCAAATCCAACCGGATGGGTAGTGGTGGTGGCTGGTCCGAAAAGGTTTACCGCCCCGGNTCATTGGCGAAAACGGGTCCCAAAAAGTTCCCCCCCAAATAAAGAAAGAAACANGGCATACAAGTCGGTTGGCCGTAAGCGTTTGCACCGATGGCAAATTGGCCGGTAGTTGTTTAATGTGGTTGACTTCACAAGGCGGCGACAACTTCAGTTAAACGTGGGTGGCATTTANCCGTTGCGCAATTGNGTTGGGACACCGGGACAGGGANAAAGGNCGNGGGGAAANAATTTCTTGACGACCGGGAAGCNANAGATTACGTGCGACTCAAACNACGNCACANTGGNGTTNTNCCAGAAACAGCGATGGCACTGAGGATTANNCAANAGGTGNTGCGGCACACCATATGTATAANAACGATANCGTATNTGACACGACCATGAATNAGAAAACNAATACCAAAAAGACTGTCCCNGAAATNGCTTTGNCGNACCGCAATTACNAAAACGGGNACAGGGTGAATTAGCAGNTGGACGAAANCAAACCAGGTCGAATCGCANCNACAGACANGACATNCNGGTTGAANTATCGATGCTCCACACGGTAAAAAAGGGCCANCANTGACTGAGTGTAACACAACACCGCANGTNACTGTAGTTGCTAGCACTACGTNATCCCTTCNCACANCACACNCTAGTGATATGAG]
consensusID : consensus_3952#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[CCGCCCACGCGTCCGATGGTGTGGTGGTGGTCGTAAAGTTTCGCCGTTTGCAACGTCCAAAGTCCCCCAAAACAAGACAGCAGCAGCGTGGCCGAGCGTGCCGTGCATAGTGTGTTAGTGTGATCAAGCGCGATCTCGTACTGTGCAAAGCGTGGCATTGTTGGCCCGGAAGGAAAAGCAGGCGAAACTTCTGCACCGGGACCGAGTCGCCTCACAGTCGCCATTGTCTTTCGCTGGTGCTGTGTGTGAAGGTGTGGGCTCATTTGTAAAGCGAGCGCGCGCGCGCGCACACACCAAACGCTGTCCGATCGCTTCCGACGCATACTAACGGACTGTGCTTGTGTGTTACTAAACTGGCGACGACGCAGCACACTCGGATCGAGATCGGTCGCGCGCGCGGATACAGTGACAGATTGAGTGCTGTGACAGAACCACACGCCAGTTTTGGTGGCGCTTAGTGTTTCTCTGTTCACGCATCTTTGCTTGTGTGCGTCTGAGAGTGTGTGTGAGGTGTAAAAACTCACCTCGACCGATCCACCGCACGTCTATTACCGTTATTGCTGGGTGCAGTGGTGCCAGCCAGTGCGAAAAAAAAAAAAAACAGCAAGGGGAGCACGATCTTAGTGATAGCAGCCGG]
[+] EMBL BM592882 [CCGCCCACGCGTCCGATGGTGTGGTGGTGGTCGTAAAGTTTCGCCGTTTGCAACGTCCAAAGTCCCCCAAAACAAGACAGCAGCAGCGTGGCCGAGCGTGCCGTGCATAGTGTGTTAGTGTGATCAAGCGCGATCTCGTACTGTGCAAAGCGTGGCATTGTTGGCCCGGAAGGAAAAGCAGGCGAAACTTCTGCACCGGGACCGAGTCGCCTCACAGTCGCCATTGTCTTTCGCTGGTGCTGTGTGTGAAGGTGTGGGCTCATTTGTAAAGCGAGCGCGCGCGCGCGCACACACCAAACGCTGTCCGATCGCTTCCGACGCATACTAACGGACTGTGCTTGTGTGTTACTAAACTGGCGACGACGCAGCACACTCGGATCGAGATCGGTCGCGCGCGCGGATACAGTGACAGATTGAGTGCTGTGACAGAACCACACGCCAGTTTTGGTGGCGCTTAGTGTTTCTCTGTTCACGCATCTTTGCTTGTGTGCGTCTGAGAGTGTGTGTGAGGTGTAAAAACTCACCTCGACCGATCCACCGCACGTCTATTACCGTTATTGCTGGGTGCAGTGGTGCCAGCCAGTGCGAAAAAAAAAAAAAACAGCAAGGGGAGCACGATCTTAGTGATAGCAGCCGG]
consensusID : consensus_3952#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CCGCTCTGAGCGGAGCGCGTGTAGCGAGCAACCACATTGCGTATAGCGCAGCCATCGCTGTGCGTGCCTGTTCGACGATCTTTGTGTGCGCGTTTCGCGTGTTTCGTGTGCATTCGTGCGTGCGTGCGCTTGTATGGTAGTGTGTGCTTGTGTGGAAGCGAATGTCATCAGCTGTTGGCGCTACCGCCCCCGGTTCGAGGCGCATACGTGGTGCGGACGGGCGTGTGCTATCTTATCGCCGCGGGCTGTGAGGGTCGCAACGTGGGACTGTTGCAGCAACAAAAAAAAAAGAGCGAAAAAGAAACGGGGCCACAAGCCAATGGTGCGCACTGTGCAGAGTTTTGTGCTAGCCGCGGGCCATTTTCTTTGTCCTCGGTCGAGGCGGACGTGTTCCAAACTCCACCGGATGGTGTGGTGGTGGTCGTAAAGTTTCGCCGTTTGCAACGTCCAAAGTCCCCCAAAACAAGACAGCAGCAGCGTGGCCGAGCGTGCCGTGCATAGTGTGTTAGTGTGATCAAGCGCGATCTCGTACTGTGCAAAGCGTGGCATTGTTGGCCCGGAAGGAAAAGCAGGCGAAACTTCTGCACCGGGACCGAGTCGCCTCACAGTCGCCATTGTCTTTCGC]
[+] EMBL BM646473 [CCGCTCTGAGCGGAGCGCGTGTAGCGAGCAACCACATTGCGTATAGCGCAGCCATCGCTGTGCGTGCCTGTTCGACGATCTTTGTGTGCGCGTTTCGCGTGTTTCGTGTGCATTCGTGCGTGCGTGCGCTTGTATGGTAGTGTGTGCTTGTGTGGAAGCGAATGTCATCAGCTGTTGGCGCTACCGCCCCCGGTTCGAGGCGCATACGTGGTGCGGACGGGCGTGTGCTATCTTATCGCCGCGGGCTGTGAGGGTCGCAACGTGGGACTGTTGCAGCAACAAAAAAAAAAGAGCGAAAAAGAAACGGGGCCACAAGCCAATGGTGCGCACTGTGCAGAGTTTTGTGCTAGCCGCGGGCCATTTTCTTTGTCCTCGGTCGAGGCGGACGTGTTCCAAACTCCACCGGATGGTGTGGTGGTGGTCGTAAAGTTTCGCCGTTTGCAACGTCCAAAGTCCCCCAAAACAAGACAGCAGCAGCGTGGCCGAGCGTGCCGTGCATAGTGTGTTAGTGTGATCAAGCGCGATCTCGTACTGTGCAAAGCGTGGCATTGTTGGCCCGGAAGGAAAAGCAGGCGAAACTTCTGCACCGGGACCGAGTCGCCTCACAGTCGCCATTGTCTTTCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3952#0 TCCNTAGCAGATTCCCGAGGTTATCTGAACGGAGCGCGTGTA-CGAGCA--CACATTNTG 57
consensus_3952#2 -------------------CCGCTCTGAGCGGAGCGCGTGTAGCGAGCAACCACATTGCG 41
consensus_3952#1 ------------------------------------------------------------
consensus_3952#0 TATAGCGCAGC-ATCGCTGTGCGTGC-TGTTCGACGATCTTTGTGTGCGCGTTTCGGGTG 115
consensus_3952#2 TATAGCGCAGCCATCGCTGTGCGTGCCTGTTCGACGATCTTTGTGTGCGCGTTTCGCGTG 101
consensus_3952#1 ------------------------------------------------------------
consensus_3952#0 TTTCGTGTGCATTCGTGCGTGCGTGCGCTTGTATGGTAGTGTGTGCTTGTGTGGAAGCGA 175
consensus_3952#2 TTTCGTGTGCATTCGTGCGTGCGTGCGCTTGTATGGTAGTGTGTGCTTGTGTGGAAGCGA 161
consensus_3952#1 ------------------------------------------------------------
consensus_3952#0 ATGTCATCAGCTGTTGG-GCTACCGCCCC-GGTTCGAGGCGCATACGTGGTGCGGACGGG 233
consensus_3952#2 ATGTCATCAGCTGTTGGCGCTACCGCCCCCGGTTCGAGGCGCATACGTGGTGCGGACGGG 221
consensus_3952#1 ------------------------------------------------------------
consensus_3952#0 CGTGTGCTATCTTATCGCCGCGGG-TGTGAGTGTGTCTGCAACGTGGGACTGTTGCAACA 292
consensus_3952#2 CGTGTGCTATCTTATCGCCGCGGGCTGTGAGGGT---CGCAACGTGGGACTGTTGCAGCA 278
consensus_3952#1 ------------------------------------------------------------
consensus_3952#0 ACAACGAAAAAAAAAACGAGAGAAAGAAACGGGGCCACAAGCCAATGGTGCCGCACTGTG 352
consensus_3952#2 ACAA---AAAAAAAAGAGCGAAAAAGAAACGGGGCCACAAGCCAATGGTGC-GCACTGTG 334
consensus_3952#1 ------------------------------------------------------------
consensus_3952#0 CAGAGTTTTGTGCTAGCCGCGGGCCANTTTNCTTTGTCCCTCNGGTCGAGGGCAGGACGT 412
consensus_3952#2 CAGAGTTTTGTGCTAGCCGCGGGCCATTTTC-TTTGTCCT--CGGTCGAGG--CGGACGT 389
consensus_3952#1 ------------------------------------------------------------
consensus_3952#0 GTTCCAAATCCAACCGGATGGGTAGTGGTGGTGGCTGGTCCGAAAAGGTTTACCGCCCCG 472
consensus_3952#2 GTTCCAAACTCCACCGGATGGT--GTGGTGGTGGT-----CGTAAAGTTTCGCCG----- 437
consensus_3952#1 -CCGCCCACGCGTCCG-ATGGT--GTGGTGGTGGT-----CGTAAAGTTTCGCCG----- 46
* * * *** **** ********** ** **** ** ***
consensus_3952#0 GNTCATTGGCGAAAACGGGTCCCAAAAAGTTCCCCCCCAAATAAAGAAAGAAACANGGCA 532
consensus_3952#2 -----TTTGC---AACG---TCCAAAG-----TCCCCCAAAACAAGACAGCAGCAGCGTG 481
consensus_3952#1 -----TTTGC---AACG---TCCAAAG-----TCCCCCAAAACAAGACAGCAGCAGCGTG 90
** ** **** ***** ******** **** ** * ** *
consensus_3952#0 TACAAGTCGGTTGGCCGTAAGCGTTTGCACCGATGGCAAATTGGCCGGTAGTTGTTTAAT 592
consensus_3952#2 GCCGAGCGTGCCGTGCATAG-----TGTGTTAGTG------TGATCAAGCGCGATCTCGT 530
consensus_3952#1 GCCGAGCGTGCCGTGCATAG-----TGTGTTAGTG------TGATCAAGCGCGATCTCGT 139
* ** * * * ** ** ** ** * * * * *
consensus_3952#0 GTGGTTGACTTCACAAGGCGGCGACAACTTCAGTTAAACGTGGGTGGCATTTANCCGTTG 652
consensus_3952#2 -------ACTGTGCAAAGCG-TGGCATTGTTGGCCCGGAAGGAAAAGCAGGCGAAACTTC 582
consensus_3952#1 -------ACTGTGCAAAGCG-TGGCATTGTTGGCCCGGAAGGAAAAGCAGGCGAAACTTC 191
*** *** *** * ** * * * *** **
consensus_3952#0 CGCAATTGNGTTGGGACACCGGGACAGGGANAAAGGNCGNGGGGAAANAATTTCTTGACG 712
consensus_3952#2 TGCACCGGGACCGAGTCGCCTC-ACAGTCGCCATTGTCTTTCGC---------------- 625
consensus_3952#1 TGCACCGGGACCGAGTCGCCTC-ACAGTCGCCATTGTCTTTCGCTGGTGCTGTGTGTGAA 250
*** * * * * ** **** * * * *
consensus_3952#0 ACCGGGAAGCNANAGATTACGTGCG-ACTCAAACNACGNCACANTGGNGTTNTNCCAGAA 771
consensus_3952#2 ------------------------------------------------------------
consensus_3952#1 GGTGTGGGCTCATTTGTAAAGCGAGCGCGCGCGCGCGCACACACCAAACGCTGTCCG--- 307
consensus_3952#0 ACAGCGATGGCACTGAGGATTANNCAANAGGTGNTGCGGCACACCATATGTATAANAACG 831
consensus_3952#2 ------------------------------------------------------------
consensus_3952#1 --ATCGCTTCCGACGCATACTAACGGACTGTGCTTGTGTGTTACTAAACTGGCGACGACG 365
consensus_3952#0 ATANCGTATNTGACACGACCATGAATNAGAAAACNAATACCAAAAAGACTGTCCCNGAAA 891
consensus_3952#2 ------------------------------------------------------------
consensus_3952#1 -CAGCACACTCGGATCGAGATCGGTCGCGCGCGCGGATAC-------AGTGACAGATTGA 417
consensus_3952#0 TNGCTTTGNCGNACCGCAATTACNAAAACGGGNACAGGGTGAATTAGCAGNTGGACGAAA 951
consensus_3952#2 ------------------------------------------------------------
consensus_3952#1 GTGCTGTGACAGAACCACACGCCAGTTTTGGTGGCGCTTAGTGTTTCTCTGTTCACGCAT 477
consensus_3952#0 NCAAACCAGGTCGAATC-GCANCNACAGACANGACATNCNGGTTGAANT--ATCGATGCT 1008
consensus_3952#2 ------------------------------------------------------------
consensus_3952#1 CTTTGCTTGTGTGCGTCTGAGAGTGTGTGTGAGGTGTAAAAACTCACCTCGACCGATCCA 537
consensus_3952#0 CCACACGGTAAAAAAGGGCCANCANTGACTG----AGTGTAACACAACACCGCANGTNAC 1064
consensus_3952#2 ------------------------------------------------------------
consensus_3952#1 CCGCACG-TCTATTACCGTTATTGCTGGGTGCAGTGGTGCCAGCCAGTGCGAAAAAAAAA 596
consensus_3952#0 TGTAGTTGCTAGCACTACGTNATCCCTTCNCACANCACACNCTAGTGATATGAG 1118
consensus_3952#2 ------------------------------------------------------
consensus_3952#1 AAAAACAGCAAGGGGAGCACGATCT-TAGTGATAGCAGCCGG------------ 637
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||