These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGATAAGATCATTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACGTACAATAATTTCTAACCAGGACGAATTATTACGAACAAAATGAATCACCTCGAATGATAGCTTCCTTGGCTATTTGTTTTTTTTTTTAACATTTTAAGAAAGAATTAAGAAAGACCGTCGGGCATGCAAAAGGCGAGTTTCATTGATCCACTATCCATTTCGTTGTGTTTTTGTATATGTGTGTCTACTTTCAAAAATGCCATCATGCGATGCTTTTCATATTTAAAATCCAGTTTATT] [+] EMBL BM641086 [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGATAAGATCATTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACGTACAATAATTTCTAACCAGGACGAATTATTACGAACAAAATGAATCACCTCGAATGATAGCTTCCTTGGCTATTTGTTTTTTTTTTTAACATTTTAAGAAAGAATTAAGAAAGACCGTCGGGCATGCAAAAGGCGAGTTTCATTGATCCACTATCCATTTCGTTGTGTTTTTGTATATGTGTGTCTACTTTCAAAAATGCCATCATGCGATGCTTTTCATATTTAAAATCCAGTTTATT] [+] EMBL BM630459 [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGATAAGATCCTTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACGTACAATAATTTCTAACCAGGACGAATTATTACAAACAAAATGAATCACCTCGAATGATAGC ] consensusID : consensus_3956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GAGGCAGATCGCCAGAGGTCATAAATATACGGATATTTGAAAAAGAAACAGTTTTGGACAACCGAAAACAACGACCGAAGCGTTTCGTTAGCGTAGCTCGATCATCATAAAGGTAGCTTAAAAAAAGGGGAGGGATTAGGTGGGTAGATTAGGAGTAAGATAAGATCATTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAAAGCAATGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGCAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACG] [+] EMBL AL696576 [GAGGCAGATCGCCAGAGGTCATAAATATACGGATATTTGAAAAAGAAACAGTTTTGGACAACCGAAAACAACGACCGAAGCGTTTCGTTAGCGTAGCTCGATCATCATAAAGGTAGCTTAAAAAAAGGGGAGGGATTAGGTGGGTAGATTAGGAGTAAGATAAGATCATTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAAAGCAATGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGCAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3956#0 ------------------------------------------------------------ consensus_3956#1 GAGGCAGATCGCCAGAGGTCATAAATATACGGATATTTGAAAAAGAAACAGTTTTGGACA 60 consensus_3956#0 ------------------------------------------------------------ consensus_3956#1 ACCGAAAACAACGACCGAAGCGTTTCGTTAGCGTAGCTCGATCATCATAAAGGTAGCTTA 120 consensus_3956#0 -----CCGCCCACGCGTCCGCCCACGCGTCCGG--TAAGATAAGATCATTATCACAAGCA 53 consensus_3956#1 AAAAAAGGGGAGGGATTAGGTGGGTAGATTAGGAGTAAGATAAGATCATTATCACAAGCA 180 * * * * * ** ************************* consensus_3956#0 GGAATTGCGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTA 113 consensus_3956#1 GGAATTGCGATCAGGGTGAACAAAAAAAAAAAAAGCAA-TGAACAAAAACAAAAAAGCTA 239 ********************************* **** ********************* consensus_3956#0 AACTTAAACCAAGCCAAAGCGG-AGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTA 172 consensus_3956#1 AACTTAAACCAAGCCAAAGCGGCAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTA 299 ********************** ************************************* consensus_3956#0 GCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAAT 232 consensus_3956#1 GCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAAT 359 ************************************************************ consensus_3956#0 AGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACG 292 consensus_3956#1 AGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACG-------------- 405 ********************************************** consensus_3956#0 TACAATAATTTCTAACCAGGACGAATTATTACGAACAAAATGAATCACCTCGAATGATAG 352 consensus_3956#1 ------------------------------------------------------------ consensus_3956#0 CTTCCTTGGCTATTTGTTTTTTTTTTTAACATTTTAAGAAAGAATTAAGAAAGACCGTCG 412 consensus_3956#1 ------------------------------------------------------------ consensus_3956#0 GGCATGCAAAAGGCGAGTTTCATTGATCCACTATCCATTTCGTTGTGTTTTTGTATATGT 472 consensus_3956#1 ------------------------------------------------------------ consensus_3956#0 GTGTCTACTTTCAAAAATGCCATCATGCGATGCTTTTCATATTTAAAATCCAGTTTATT 531 consensus_3956#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||