These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence [CCGGACCAAACCCCGCGTGTGCACATTATCCCAGGTCAGTCAGAAGAAACCGGTCAGTATTGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGAGGCACACTCGAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACGAAGAACGCCGGGCAGAATTTAAGAACGCCTCGTCTATATCGCGCAGATCGGTTCCTCCCGTTCCACGGGCAGTGTTGTAGAGTTGTAGATGAACGGAATTGCCGTCCCGTAAGAGCCTGGTTCCGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCAACAGAAGGGGCCAGGCGAAAAAAAAGAGAGAGAAAGTAACAACGTCCAACCGTGTGCCGGAGATTGGCTTCAACGGGCACGGAAGCCGCCGTTCCAGCCGCCGTAAGCGGGGACGGTGGGGCCCTTTTGCAAACCGTAGGAAATTGTTTGTTTAATTAAATTTTGCACCAGGAAATAGCACGACTTTTAGCAAACATACAACAAAAAAACCAAGGAAATGGCATCAACATTCCGCTGTCCGTTCTCGCTGGTTCTCTGGTTTCAACGCAGAAGCACATCGTCACGCAGTAGATAGCACGAGGTGGTGTGGTGTTTCGCTGAATCTTGATAGTGTAAATGTGATTTTAATTTCGAAAGGAACAGGCTAGTACAAG] [+] EMBL BM584484 [CCGGACCAAACCCCGCGTGTGCACATTATCCCAGGTCAGTCAGAAGAAACCGGTCAGTATTGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGAGGCACACTCGAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACGAAGAACGCCGGGCAGAATTTAAGAACGCCTCGTCTATATCGCGCAGATCGGTTCCTCCCGTTCCACGGGCAGTGTTGTAGAGTTGTAGATGAACGGAATTGCCGTCCCGTAAGAGCCTGGTTCCGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCAACAGAAGGGGCCAGGCGAAAAAAAAGAGAGAGAAAGTAACAACGTCCAACCGTGTGCCGGAGATTGGCTTCAACGGGCACGGAAGCCGCCGTTCCAGCCGCCGTAAGCGGGGACGGTGGGGCCCTT ] [+] EMBL BX622556 [ CCAGGTCAGTCAGAAGAAACCGGTCAGTATTGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGAGGCACACTCGAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACGAAGAACGCCGGGCAGAATTTAAGAACGCCTCGTCTATATCGCGCAGATCGGTTCCTCCCGTTCCACGGGCAGTGTTGTAGAGTTGTAGATGAACGGAATTGCCGTCCCGTAAGAGCCTGGTTCCGGTCGGCGAGAGTCGCGNTGCTGGTGACGCACGACGCAACAGAAGGGGCCAGGCGAAAAAAAAGAGAGAGAAAGTAACAACGTCCAACCGTGTGCCGGAGATTGGCTTCAACGGGCACGGAAGCCGCCGTTCCAGCCGCCGTAAGC GGGACGGTGGGGCCCTTTTGCAAACCGTAGGAAATTGTTTGTTTAATTAAATTTTGCACCAGGAAATAGCACGACTTTTAGCAAACATACAACAAAAAAACCAAGGAAATGGCATCAACATTCCGCTGTCCGTTCTCGCTGGTTCTCTGGTTTCAACGCAGAAGCACATCGTCACGCAGTAGATAGCACGAGGTGGTGTGGTGTTTCGCTGAATCTTGATAGTGTAAATGTGATTTTAATTTCGAAAGGAACAGGCTAGTACAAG] consensusID : consensus_3984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CCAATCATGTACCACAACACTCCGNAGGCACACTCNGTAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACAGAAGAACGCCGGGCAGAATNTTAAGAACGCCCCGTCTATATCTGCGTAGATCGGTTCCTCCCGTNTCCACGGGCAGTGTTGTANGAGNTTGTATGATGAACGGAATTGCCGTCCNCGTAAGAGCCTGGTTCCAGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCANACAGAAGGGGCCAGACAAAAAAAAGAGAGAAAGTAACAATCGTGCTCAACTCGTGTGCCGGAGATGTGGCTTCAACGGGCACGGAAGCCGCGCGGTGGGGCCCCTTATGTCANAACCTGTAGG] [+] EMBL BX619415 [CCAATCATGTACCACAACACTCCGNAGGCACACTCNGTAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACAGAAGAACGCCGGGCAGAATNTTAAGAACGCCCCGTCTATATCTGCGTAGATCGGTTCCTCCCGTNTCCACGGGCAGTGTTGTANGAGNTTGTATGATGAACGGAATTGCCGTCCNCGTAAGAGCCTGGTTCCAGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCANACAGAAGGGGCCAGACAAAAAAAAGAGAGAAAGTAACAATCGTGCTCAACTCGTGTGCCGGAGATGTGGCTTCAACGGGCACGGAAGCCGCGCGGTGGGGCCCCTTATGTCANAACCTGTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3984#0 CCGGACCAAACCCCGCGTGTGCACATTATCCCAGGTCAGTCAGAAGAAACCGGTCAGTAT 60 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 TGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGA-GGCACACTCG--AA 117 consensus_3984#1 --------------------CCAATCATGTACCACAACACTCCGNAGGCACACTCNGTAA 40 ************************ ********* ** consensus_3984#0 CGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACAC-GAAGA 176 consensus_3984#1 CGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACAGAAGA 100 ****************************************************** ***** consensus_3984#0 ACGCCGGGCAGAATTT-AAGAACGCCTCGTCTATATC-GCGCAGATCGGTTCCTCCCGTT 234 consensus_3984#1 ACGCCGGGCAGAATNTTAAGAACGCCCCGTCTATATCTGCGTAGATCGGTTCCTCCCGTN 160 ************** * ********* ********** *** ***************** consensus_3984#0 -CCACGGGCAGTGTTGTAGA--GTTGTA-GATGAACGGAATTGCCGTCCC-GTAAGAGCC 289 consensus_3984#1 TCCACGGGCAGTGTTGTANGAGNTTGTATGATGAACGGAATTGCCGTCCNCGTAAGAGCC 220 ***************** ***** ******************** ********* consensus_3984#0 TGGTTCC-GGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCAA-CAGAAGGGGCCA 347 consensus_3984#1 TGGTTCCAGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCANACAGAAGGGGCCA 280 ******* ************************************** ************ consensus_3984#0 GGCGAAAAAAAAGAGAGAGAAAGTAACAACGTCCAAC-CGTGTGCCGGAGAT-TGGCTTC 405 consensus_3984#1 GACAAAAAAAAGAGAGAAAGTAACAATCGTGCTCAACTCGTGTGCCGGAGATGTGGCTTC 340 * * ******* * * ** * **** ************** ******* consensus_3984#0 AACGGGCACGGAAGCCGC-CGTTCCAGCCGCCGTAAGCGGGGACGGTGGGGCCCTTTTGC 464 consensus_3984#1 AACGGGCACGGAAGCCGCGCGGTGGGGCCCCTTATGTCANAACCTGTAGG---------- 390 ****************** ** * *** * * * ** ** consensus_3984#0 AAACCGTAGGAAATTGTTTGTTTAATTAAATTTTGCACCAGGAAATAGCACGACTTTTAG 524 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 CAAACATACAACAAAAAAACCAAGGAAATGGCATCAACATTCCGCTGTCCGTTCTCGCTG 584 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 GTTCTCTGGTTTCAACGCAGAAGCACATCGTCACGCAGTAGATAGCACGAGGTGGTGTGG 644 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 TGTTTCGCTGAATCTTGATAGTGTAAATGTGATTTTAATTTCGAAAGGAACAGGCTAGTA 704 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 CAAG 708 consensus_3984#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||