These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence [GGCTTCTGGCTGCTGGGCGAGGATGAGCTGGCCGAGGCCCTGTACGGCCAGGTGGAAACGCTGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTCCACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCACTGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACGGCCCTCTGGGAGATCGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCGGGGCAAATTTTGGCCGCCTTCCAGGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAATTCCCGAATGCCCAGTCGCGCGTGTTTCTGTACGAGGCGGTCTGCCGGCTGATGGCGGGTGCGGCGCCCGGTCCGACCCAGCAGCTGCTGGACCGCAGCCTGCGCCAGCGCAACTCCCGCTCGTCGCTCATCTGCGGCAAGGACCGGTCGGCCCAGCTGGCCGGTGGGCGGGAGCGGGCCGCCGCCCTGT] [+] EMBL BX602717 [GGCTTCTGGCTGCTGGGCGAGGATGAGCTGGCCGAGGCCCTGTACGGCCAGGTGGAAACGCTGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTCCACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCACTGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACGGCCCTCTGGGAGATCGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCGGGGCAAATTTTGGCCGCCTTCCAGGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAATTCCCGAATGCCCAGTCGCGCGTGTTTCTGTACGAGGCGGTCTGCCGGCTGATGGCGGGTGCGGCGCCCGGTCCGACCCAGCAGCTGCTGGACCGCAGCCTGCGCCAGCGCAACTCCCGCTCGTCGCTCATCTGCGGCAAGGACCGGTCGGCCCAGCTGGCCGGTGGGCGGGAGCGGGCCGCCGCCCTGT] [+] EMBL BX610752 [ TGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTCCACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCACTGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACGGCCCTCTGGGAGATTGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCGGGGCAAATTTTGGCCGCCTTCCAAGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAATTCCCGAATGCCCAGTCGCG ] consensusID : consensus_3985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 129 fasta sequence [CGAGGCAAGATGCAGAGGGTTGACTTTGGCCACTGTAATGCAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCACATCTGCAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGAC] [+] EMBL AL697192 [CGAGGCAAGATGCAGAGGGTTGACTTTGGCCACTGTAATGCAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCACATCTGCAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3985#0 GGCTTCTGGCTGCTGGGCGAGGATGAGCTGGCCGAGGCCCTGTACGGCCAGGTGGAAACG 60 consensus_3985#1 ------------------------------------------------------------ consensus_3985#0 CTGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTC 120 consensus_3985#1 ------------------------------------------------------------ consensus_3985#0 CACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCAC 180 consensus_3985#1 -----------------------CGAGGCAAGATGCAG----AGGGTTGACTTTGGCCAC 33 * ** * ** ** * ********** consensus_3985#0 TGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCG 240 consensus_3985#1 TGTAATGCA-GCAGCCGCTTCCTCGAGGACAGTCTTACCGGCA-CATCTGCA-GACGCCG 90 ********* ********************************* ******** ******* consensus_3985#0 AGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACG 300 consensus_3985#1 AGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGAC--------------------- 129 *************************************** consensus_3985#0 GCCCTCTGGGAGATCGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCG 360 consensus_3985#1 ------------------------------------------------------------ consensus_3985#0 GGGCAAATTTTGGCCGCCTTCCAGGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAA 420 consensus_3985#1 ------------------------------------------------------------ consensus_3985#0 TTCCCGAATGCCCAGTCGCGCGTGTTTCTGTACGAGGCGGTCTGCCGGCTGATGGCGGGT 480 consensus_3985#1 ------------------------------------------------------------ consensus_3985#0 GCGGCGCCCGGTCCGACCCAGCAGCTGCTGGACCGCAGCCTGCGCCAGCGCAACTCCCGC 540 consensus_3985#1 ------------------------------------------------------------ consensus_3985#0 TCGTCGCTCATCTGCGGCAAGGACCGGTCGGCCCAGCTGGCCGGTGGGCGGGAGCGGGCC 600 consensus_3985#1 ------------------------------------------------------------ consensus_3985#0 GCCGCCCTGT 610 consensus_3985#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||