Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3990 cluster # 3990       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3990#0 length = 1287 sequences # 2  
consensus_3990#1 length = 866 sequences # 1  

consensusID : consensus_3990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1287
fasta sequence
                              [CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTGCCCGTGTTTCCGATGTGCTTCGACGCAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACGGCAACCATCTGCACGATCTGCAGATCGACTTCAAGGACGACCACAACGACGCGTGGCACTTTGTCGTGCCGGACCGGTCGAGCTGGGCGACGCAGAGCATAACGCTGCGCGGCGGCGACTTCAACCTGGACGGCTATCCGGACCTGCTCGCCACGCTGACGAAATCGGGCGACCAGATGCAAACCTTCCTGCTGGAGAACGTGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGCACGTTCGTGGTGCGCTGGAAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAACGACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTACGATGCCAACTTCGTGAAGGTGATCGTGCTGACCGGGCTGAGCAATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCGCACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGGGGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCTGCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGGGCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGTGCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAAGCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGATACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCACCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAGGCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTAATGCTGCGATACATACATACATAACGTAGACTGTAATCTA]

[+] EMBL BM575928             [CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTGCCCGTGTTTCCGATGTGCTTCGACGCAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACGGCAACCATCTGCACGATCTGCAGATCGACTTCAAGGACGACCACAACGACGCGTGGCACTTTGTCGTGCCGGACCGGTCGAGCTGGGCGACGCAGAGCATAACGCTGCGCGGCGGCGACTTCAACCTGGACGGCTATCCGGACCTGCTCGCCACGCTGACGAAATCGGGCGACCAGATGCAAACCTTCCTGCTGGAGAACGTGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGCACGTTCGTGGTGCGCTGGAAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAACGACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX617062             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTACGATGCCAACTTCGTGAAGGTGATCGTGCTGACCGGGCTGAGCAATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCGCACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGGGGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCTGCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGGGCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGTGCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAAGCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGATACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCACCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAGGCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTAATGCTGCGATACATACATACATAACGTAGACTGTAATCTA]


>consensus_3990#0 CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCCACGAAAAG TTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGG GCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTGCCCGTGTTTCCGATGTGCTTC GACGCAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACGGCAACCATCTGCACGATCTG CAGATCGACTTCAAGGACGACCACAACGACGCGTGGCACTTTGTCGTGCCGGACCGGTCG AGCTGGGCGACGCAGAGCATAACGCTGCGCGGCGGCGACTTCAACCTGGACGGCTATCCG GACCTGCTCGCCACGCTGACGAAATCGGGCGACCAGATGCAAACCTTCCTGCTGGAGAAC GTGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGCACGTTCGTGGTGCGCTGGAAG GCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAACGAC GGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTC CGCAACTCGCTCGACTACGATGCCAACTTCGTGAAGGTGATCGTGCTGACCGGGCTGAGC AATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCGCACGTTCGGGACG AACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGGGGAACCGCAGCAC GGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCTGCCGTTCACGACG TTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGGGCTGTGGAACCAT TCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGTGCCGAACCCGATC GACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAAGCTGATCGTGATG AGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGATACTCATCCTGTAC GCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCACCGGTTCCATTTC GATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAGGCCAGTGGGTCAG TTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTAATGCTGCGATACA TACATACATAACGTAGACTGTAATCTA



consensusID : consensus_3990#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 866
fasta sequence
                              [CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTGCCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGACCTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAACGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATTAACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCCCAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAGCAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCACGTATCGGTGGGTTGCGCTTGGAAAGTGCTGCTTGGGCCCCGTTTACTCCGGAAACCACGGGTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAACTGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNGTGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT]

[+] EMBL AL697296             [CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTGCCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGACCTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAACGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATTAACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCCCAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAGCAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCACGTATCGGTGGGTTGCGCTTGGAAAGTGCTGCTTGGGCCCCGTTTACTCCGGAAACCACGGGTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAACTGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNGTGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT]


>consensus_3990#1 CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTG CCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGAC CTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGG CTGGGCGTGAACAGCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCA ACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGC TTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTGC ACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAAC GCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATTA ACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCCC AACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAGC AACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCACG TATCGGTGGGTTGCGCTTGGAAAGTGCTGCTTGGGCCCCGTTTACTCCGGAAACCACGGG TAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAACTGACGGG CATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNGTGGCCAA ACGGGGAACTGCCGAGGCCCGGNGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3990#0      ------------------------------------------------------------
consensus_3990#1      CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTG 60
                                                                                  

consensus_3990#0      ------------------------------------------------------------
consensus_3990#1      CCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGAC 120
                                                                                  

consensus_3990#0      ------------------------CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGG 36
consensus_3990#1      CTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGG 180
                                              * **********************************

consensus_3990#0      CTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGC 96
consensus_3990#1      CTGGGCGTGAACAGC-ACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGC 239
                      *************** ********************************************

consensus_3990#0      AACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTG 156
consensus_3990#1      AACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTG 299
                      ************************************************************

consensus_3990#0      CT-GCCCGTGTTTCCGATGTGCTTCGAC-GCAAA-GTGCGTCAACTCGAGCATCTTCGTG 213
consensus_3990#1      CTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTG 359
                      ** ************************* ***** *************************

consensus_3990#0      CACCACGGCAACCATC--TGCACGATCTGCAGAT-CGACTTCAAGGAC-GACCACAACGA 269
consensus_3990#1      CACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAA 419
                      ****** * ******   **************** ************* ********  *

consensus_3990#0      CGCGTGGCA--CTTTGTCG-TGCCGGA--CCGGTCGAGCT-GGGCGACGC-AGAGCA--T 320
consensus_3990#1      CGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATT 479
                      ********    ******* ******   *********** ********* *****   *

consensus_3990#0      AACG--CTGCGCGGCGG-CGACTTCAA-CCTGGAC--GGCTATCCGGACCTGC--TCGCC 372
consensus_3990#1      AACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCC 539
                      ****   *********  ********* * *****  **   **********   *****

consensus_3990#0      --ACGC-TGACGAAATC---GGGCGACCAGAT----GCAAACCTT---CCTGCTGGAGAA 419
consensus_3990#1      CAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAG 599
                        **** ********     *********       ******* *   * ******  * 

consensus_3990#0      CG-TGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGC-ACGTTCGTGGTGCGCTGG 477
consensus_3990#1      CAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCAC 659
                      *   *  *  ** *  **          *  * ** **  * ** ** *    ***    

consensus_3990#0      AAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAAC 537
consensus_3990#1      GTATCGGTGGGTT-GCGCTTGGAAAGTGCTGCTTGGGCCCCGTTT----ACTCCGGAAAC 714
                          ** ***    *  ** * *  ** *      **   *****    *** *   ***

consensus_3990#0      GACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCG 597
consensus_3990#1      CACGG-GTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAAC 773
                       ****  **  * *   ***    *      ** *     *   **  *  *    *   

consensus_3990#0      TTCCGCA-ACTCGCTCGACTACG----ATGCCAACTTCGTGAAGGTGATCGTGCTGACCG 652
consensus_3990#1      TGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNG 833
                      *  **   * *  ** * * ***    *  ** * ** **  **  *   * **  ** *

consensus_3990#0      -GGCTGAGC----AATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCG 707
consensus_3990#1      TGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT--------------------------- 866
                       ***  * *    **  ** * ** ***  ***                           

consensus_3990#0      CACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGG 767
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      GGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCT 827
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      GCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGG 887
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      GCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGT 947
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      GCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAA 1007
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      GCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGAT 1067
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      ACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCA 1127
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      CCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAG 1187
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      GCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTA 1247
consensus_3990#1      ------------------------------------------------------------
                                                                                  

consensus_3990#0      ATGCTGCGATACATACATACATAACGTAGACTGTAATCTA 1287
consensus_3990#1      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)