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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1082 fasta sequence
[GAATACGATATCACTCCTGTGGAGGTGTTTTACTTCCGCAATATTTGCGAACTTAAGCCGGATCGGTTACGCATGGCTTAAGGCTGAACTGTTGCGTTCACAACATTTCCACAGCTGTTTACGACGGCTCATCTTGGATGAATGCCACAAACAACCGTACACAATCCAGGTGAAGGCGTATCTAGTGCTAAGTTATAGTGGCGTGGCAGTGAGCAACGTATTGCTGGACGGGAAAAGCGCCCGTGAAGCGATACAGTCCATCTTCAAGGTAGCAAACAGTAAACCCTATCAACTGCGTAGTGCCATGTTCCGCTGTTTAAAGCGTATGCTGCAAAACGAATCGAAGGGCTCAAATGAGTTCACGTTGAACGTTGATTTTGTACCAACTCTTACTGCTGCATATCAATCGAAACCCATTAGGTTAACTGCAGTGGAGTGTTTGCATATAGTGGGCAGAAAAATTTTCGAAGGAAAATCGCTTAATCAATACATAAGTTTCAGTTTTGCTCTATTGAATTTACTAAGTGACGATGATTCTAGTATTCGTGCCAAAGCGTCAATGGTCGTAAGCCAACTTCACCAAGTGGTCGAAAAAGTGAAACAAAAACCACTAGTAGCGACGTATGCACAAAGTACATATTTACGATTACTGACCAAAACAATGGTGGGTCATAAGTTTACCATAAATCAGGCAGTATCTGTTATCGTCGTTATATGGATAATGAAAGAGCAGGAAGCGGAAGACGAATCTCCAAATATTGACGATATATCTGAAATGAAAGTTTTCGACAAAAATGAAGTAAATATCTACGGTGAGCTAGAATTAGTTAGAGACTATTGTATAGCCGAGCTAAAACATATAGAATTGAATAATACGGACTACACACTGGACAGCAATATAGATAAAATTCAAAAGATTGTCGACAAGCATCTGCAACAACCGACCTGTATACGGGAGCTCTTAAAATCAACCGCAAAAATATCATCTAGATTCATTGGAATTGTTCTATAAGAACAGCCTCCGTTTCATACTACATTGTGTGTTGACTAAACAAAACAAACTTTGTAAAAAAAAATAAACC]
[+] EMBL CNS09CER [GAATACGATATCACTCCTGTGGAGGTGTTTTACTTCCGCAATATTTGCGAACTTAAGCCGGATCGGTTACGCATGGCTTAAGGCTGAACTGTTGCGTTCACAACATTTCCACAGCTGTTTACGACGGCTCATCTTGGATGAATGCCACAAACAACCGTACACAATCCAGGTGAAGGCGTATCTAGTGCTAAGTTATAGTGGCGTGGCAGTGAGCAACGTATTGCTGGACGGGAAAAGCGCCCGTGAAGCGATACAGTCCATCTTCAAGGTAGCAAACAGTAAACCCTATCAACTGCGTAGTGCCATGTTCCGCTGTTTAAAGCGTATGCTGCAAAACGAATCGAAGGGCTCAAATGAGTTCACGTTGAACGTTGATTTTGTACCAACTCTTACTGCTGCATATCAATCGAAACCCATTAGGTTAACTGCAGTGGAGTGTTTGCATATAGTGGGCAGAAAAATTTTCGAAGGAAAATCGCTTAATCAATACATAAGTTTCAGTTTTGCTCTATTGAATTTACTAAGTGACGATGATTCTAGTATTCGTGCCAAAGCGTCAATGGTCGTAAGCCAACTTCACCAAGTGGTCGAAAAAGTGAAACAAAAACCACTAGTAGCGACGTATGCACAAAGTACATATTTACGATTACTGACCAAAACAATGGTGGGTCATAAGTTTACCATAAATCAGGCAGTATCTGTTATCGTCGTTATATGGATAATGAAAGAGCAGGAAGCGGAAGACGAATCTCCAAATATTGACGATATATCTGAAATGAAAGTTTTCGACAAAAATGAAGTAAATATCTACGGTGAGCTAGAATTAGTTAGAGACTATTGTATAGCCGAGCTAAAACATATAGAATTGAATAATACGGACTACACACTGGACAGCAATATAGAT ]
[-] EMBL CNS09CES [ GTGAAGCGATACAGTCCATCTTCAAGGTAGCAAACAGTAAACCCTATCAACTGCGTAGTGCCATGTTCCGCTGTTTAAAGCGTATGCTGCAAAACGAATCGAAGGGCTCAAATGAGTTCACGTTGAACGTTGATTTTGTACCAACTCTTACTGCTGCATATCAATCGAAACCCATTAGGTTTACTGCAGTGGAGTGTTTGCATATAGTGGGCAGAAAAATTTTCGAAGGAAAATCGCTTAATCAATACATAAGTTTCAGTTTTGCTCTATTGAATTTACTAAGTGACGATGATTCTAGTATTCGTGCCAAAGCGTCAATGGTCGTAAGCCAACTTCACCAAGTGGTCGAAAAAGTGAAACAAAAACCACTAGTAGCGACGTATGCACAAAGTACATATTTACGATTACTGACCAAAACAATGGTGGGTCATAAGTTTACCATAAATCAGGCAGTATCTGTTATCGTCGTTATATGGATAATGAAAGAGCAGGAAGCGGAAGACGAATCTCCAAATATTGACGATATATCTGAAATGAAAGTTTTCGACAAAAATGAAGTAAATATCTACGGTGAGCTAGAATTAGTTAGAGACTATTGTATAGCCGAGCTAAAACATATAGAATTGAATAATACGGACTACACACTGGACAGCAATATAGATAAAATTCAAAAGATTGTCGACAAGCATCTGCAACAACCGACCTGTATACGGGAGCTCTTAAAATCAACCGCAAAAATATCATCTAGATTCATTGGAATTGTTCTATAAGAACAGCCTCCGTTTCATACTACATTGTGTGTTGACTAAACAAAACAAACTTTGTAAAAAAAAATAAACC]
consensusID : consensus_3992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[ATNCCCCGAGGTTAATTTCCACAGCTGTTTACGACGGCTCATCTTGGATGAATGCCACAAACAACCGTACACAATCCAGGTGAAGGCGTATCTAGTGCTAAGTTATAGTGGCGTGGCAGTGAGCAACGTATTGCTGGACGGGAAAAGCGCCCGTGAAGCAATACAGTCCATCTTCAAGGTAGCAAACAGTAAACCCTATCAACTGCGTAGTGCCATGTTCCGCTGTTTAACGCGTATGCTGCAAAACGAATCGACAGGGCTCAAATGAGTTCACGTTTGAACGTTGCATTTTGTACCAACTCTTACTGCTGCATATCAATCGAAACCCATTAGGTTAACTGCAGTGGAGTGTCTCTGCNTATAGTGGGCAGAAAANTTTCTCGAAGGAACAATCGCTTAATCAATACATAAGTTNTCAGTTTTGCTCTATTGAATTTCACTAAGTGACGATGATTCTAGTATTCGTGCCAAAGCGTCAATGGTCGTAAGCCAACTTCACCAAGTGGTCGAAACAAGTGAAACAAAACACCACTAGTAGCGACGTATGCACAAAGTGCATATTTTACGATTACTGACCAAAACAATGGTGGGTCATANGTTTACCATAAATCAGGTAGTA]
[+] EMBL AL697357 [ATNCCCCGAGGTTAATTTCCACAGCTGTTTACGACGGCTCATCTTGGATGAATGCCACAAACAACCGTACACAATCCAGGTGAAGGCGTATCTAGTGCTAAGTTATAGTGGCGTGGCAGTGAGCAACGTATTGCTGGACGGGAAAAGCGCCCGTGAAGCAATACAGTCCATCTTCAAGGTAGCAAACAGTAAACCCTATCAACTGCGTAGTGCCATGTTCCGCTGTTTAACGCGTATGCTGCAAAACGAATCGACAGGGCTCAAATGAGTTCACGTTTGAACGTTGCATTTTGTACCAACTCTTACTGCTGCATATCAATCGAAACCCATTAGGTTAACTGCAGTGGAGTGTCTCTGCNTATAGTGGGCAGAAAANTTTCTCGAAGGAACAATCGCTTAATCAATACATAAGTTNTCAGTTTTGCTCTATTGAATTTCACTAAGTGACGATGATTCTAGTATTCGTGCCAAAGCGTCAATGGTCGTAAGCCAACTTCACCAAGTGGTCGAAACAAGTGAAACAAAACACCACTAGTAGCGACGTATGCACAAAGTGCATATTTTACGATTACTGACCAAAACAATGGTGGGTCATANGTTTACCATAAATCAGGTAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3992#0 GAATACGATATCACTCCTGTGGAGGTGTTTTACTTCCGCAATATTTGCGAACTTAAGCCG 60
consensus_3992#1 ------------------------------------------------------------
consensus_3992#0 GATCGGTTACGCATGGCTTAAGGCTGAACTGTTGCGTTCACAACATTTCCACAGCTGTTT 120
consensus_3992#1 --------------------------ATNCCCCGAGGTTA----ATTTCCACAGCTGTTT 30
* * * * * ****************
consensus_3992#0 ACGACGGCTCATCTTGGATGAATGCCACAAACAACCGTACACAATCCAGGTGAAGGCGTA 180
consensus_3992#1 ACGACGGCTCATCTTGGATGAATGCCACAAACAACCGTACACAATCCAGGTGAAGGCGTA 90
************************************************************
consensus_3992#0 TCTAGTGCTAAGTTATAGTGGCGTGGCAGTGAGCAACGTATTGCTGGACGGGAAAAGCGC 240
consensus_3992#1 TCTAGTGCTAAGTTATAGTGGCGTGGCAGTGAGCAACGTATTGCTGGACGGGAAAAGCGC 150
************************************************************
consensus_3992#0 CCGTGAAGCGATACAGTCCATCTTCAAGGTAGCAAACAGTAAACCCTATCAACTGCGTAG 300
consensus_3992#1 CCGTGAAGCAATACAGTCCATCTTCAAGGTAGCAAACAGTAAACCCTATCAACTGCGTAG 210
********* **************************************************
consensus_3992#0 TGCCATGTTCCGCTGTTTAAAGCGTATGCTGCAAAACGAATCGA-AGGGCTCAAATGAGT 359
consensus_3992#1 TGCCATGTTCCGCTGTTTAACGCGTATGCTGCAAAACGAATCGACAGGGCTCAAATGAGT 270
******************** *********************** ***************
consensus_3992#0 TCACGTT-GAACGTTG-ATTTTGTACCAACTCTTACTGCTGCATATCAATCGAAACCCAT 417
consensus_3992#1 TCACGTTTGAACGTTGCATTTTGTACCAACTCTTACTGCTGCATATCAATCGAAACCCAT 330
******* ******** *******************************************
consensus_3992#0 TAGGTTAACTGCAGTGGAGTGTTT--GCATATAGTGGGCAGAAAAATTT-TCGAAGGAA- 473
consensus_3992#1 TAGGTTAACTGCAGTGGAGTGTCTCTGCNTATAGTGGGCAGAAAANTTTCTCGAAGGAAC 390
********************** * ** **************** *** *********
consensus_3992#0 AATCGCTTAATCAATACATAAGTTT-CAGTTTTGCTCTATTGAATTT-ACTAAGTGACGA 531
consensus_3992#1 AATCGCTTAATCAATACATAAGTTNTCAGTTTTGCTCTATTGAATTTCACTAAGTGACGA 450
************************ ********************* ************
consensus_3992#0 TGATTCTAGTATTCGTGCCAAAGCGTCAATGGTCGTAAGCCAACTTCACCAAGTGGTCGA 591
consensus_3992#1 TGATTCTAGTATTCGTGCCAAAGCGTCAATGGTCGTAAGCCAACTTCACCAAGTGGTCGA 510
************************************************************
consensus_3992#0 AA-AAGTGAAACAAAA-ACCACTAGTAGCGACGTATGCACAAAGTACATATTT-ACGATT 648
consensus_3992#1 AACAAGTGAAACAAAACACCACTAGTAGCGACGTATGCACAAAGTGCATATTTTACGATT 570
** ************* **************************** ******* ******
consensus_3992#0 ACTGACCAAAACAATGGTGGGTCATAAGTTTACCATAAATCAGGCAGTATCTGTTATCGT 708
consensus_3992#1 ACTGACCAAAACAATGGTGGGTCATANGTTTACCATAAATCAGGTAGTA----------- 619
************************** ***************** ****
consensus_3992#0 CGTTATATGGATAATGAAAGAGCAGGAAGCGGAAGACGAATCTCCAAATATTGACGATAT 768
consensus_3992#1 ------------------------------------------------------------
consensus_3992#0 ATCTGAAATGAAAGTTTTCGACAAAAATGAAGTAAATATCTACGGTGAGCTAGAATTAGT 828
consensus_3992#1 ------------------------------------------------------------
consensus_3992#0 TAGAGACTATTGTATAGCCGAGCTAAAACATATAGAATTGAATAATACGGACTACACACT 888
consensus_3992#1 ------------------------------------------------------------
consensus_3992#0 GGACAGCAATATAGATAAAATTCAAAAGATTGTCGACAAGCATCTGCAACAACCGACCTG 948
consensus_3992#1 ------------------------------------------------------------
consensus_3992#0 TATACGGGAGCTCTTAAAATCAACCGCAAAAATATCATCTAGATTCATTGGAATTGTTCT 1008
consensus_3992#1 ------------------------------------------------------------
consensus_3992#0 ATAAGAACAGCCTCCGTTTCATACTACATTGTGTGTTGACTAAACAAAACAAACTTTGTA 1068
consensus_3992#1 ------------------------------------------------------------
consensus_3992#0 AAAAAAAATAAACC 1082
consensus_3992#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||