These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1084 fasta sequence [CCGGCAACGTATGCGACGAACATTCGTCAGTCGATGGTGGTAACGTTCGGAGCAAGAGATCGTCATGGAGAAACACTTTCTGTTGGGACTTGTGCTGCTGGCGTTCAAACTTAGTGTTAAGTGTGTTGTAATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGTCGACTGGGTCCGTATCCCAACGATGGTCGGCGAATGGATTTGGACGCATCGACGCTCGGTTAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCTGCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTCCTTGCTAGGTTCCAACTTCCGGTCCGATCTTCCAACAAGGATCATCGTGCATGGTTGGCAAAGCAGCAAAAGCTCCCCGCTAGCGGAAAGTATTCGTGATACGTATCTGCTGCTTTGGGACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTTCCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGGAAGAATGTGTACGTCGTTGGGCACAGTTTGGGAGC-GCACGTTGCC-GGCATAGCTTGGCAAGAGGGTTCAGAATGGACAGCTGCATACCATCATTGGCCTTGATCCGGCTACTGCCACTGTTTTCGATTCACGAGAAAGAAAATCTGCATCGACCATCAGTGACGCAATGTATGTGGAGGTGATACATACCGGCGGAGTGGCTTCTCGGTTTNTCGGGATACCGATCGGGACGGNTGACTTATTACACCGAACGGAGGCTCCCATCAACCGGGCTGTGGCGCTTGGCACCGTTGTNGGACTGTGTTCGCACACTCGNTGCTTGGNGCAGCTGTACTGCGNGAGCTCGCTTAGCTAGNAGCCGGTGNGCAAAACTNTGGTGGCCACGACGGATATGACACTCGCATGGACGCGACGANATACACGCACCTGCNCGCCCTGTGGACGCATGGATNCCCANCGGACT] [+] EMBL BM607081 [CCGGCAACGTATGCGACGAACATTCGTCAGTCGATGGTGGTAACGTTCGGAGCAAGAGATCGTCATGGAGAAACACTTTCTGTTGGGACTTGTGCTGCTGGCGTTCAAACTTAGTGTTAAGTGTGTTGTAATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGTCGACTGGGTCCGTATCCCAACGATGGTCGGCGAATGGATTTGGACGCATCGACGCTCGGTTAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCTGCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTCCTTGCTAGGTTCCAACTTCCGGTCCGATCTTCCAACAAGGATCATCGTGCATGGTTGGCAAAGCAGCAAAAGCTCCCCGCTAGCGGAAAGTATTCGTGATACGTATCTGCTGCTTTGGGACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTTCCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGGAAGAATGTGTACGTCGTTGGGCACAGTTTGGGAGC GCACGTTGCC GGCATAGCTTGGCAAGAGGGTTCAGAATGGACAGCTGCAT ] [+] EMBL AL930267 [ tgcccgaGGTTTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTT CCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGG AGAATGTGTACGTCGTTGGGCACAGTTTGGGAGCTGCACGTTGCCTGGCATAGC TGGCAAGAGGGTTCAGAATGGACAGCTCCATACCATCATTGGCCTTGATCCGGCTACTGCCACTGTTTTCGATTCACGAGAAAGAAAATCTGCATCGACCATCAGTGACGCAATGTATGTGGAGGTGATACATACCGGCGGAGTGGCTTCTCGGTTTNTCGGGATACCGATCGGGACGGNTGACTTATTACACCGAACGGAGGCTCCCATCAACCGGGCTGTGGCGCTTGGCACCGTTGTNGGACTGTGTTCGCACACTCGNTGCTTGGNGCAGCTGTACTGCGNGAGCTCGCTTAGCTAGNAGCCGGTGNGCAAAACTNTGGTGGCCACGACGGATATGACACTCGCATGGACGCGACGANATACACGCACCTGCNCGCCCTGTGGACGCATGGATNCCCANCGGACT] consensusID : consensus_3994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [ATCCCCCGAGGTTAGTTCAAACTAAGTGTTAGTGTGTTGTATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGTCGACTGGGTACGCATCCCAACGATGGTGGGTGAATGGATTTGGACGCATCGACGCTCGGTTAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCTGCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTCCTTGCTAGGTTCCAACTTCCGGTCCGATCTGCCAACAAGGATCATCGTGCATGGTTGGCAAAGCAGCAAAAGCTCCCCGCTAGCGGCAAAGTATTCGTGATACGTATCTGCTGCTTTGGGACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTTCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGGAGAATGTGTACGTCGTATGGGCACAGNTNNNGGGAGCGCACGTTGCCGGACATAGCTGGCCAAGAGGGTTCAGAATGGACAGTCCATACATCATTGGCTTGATCCGGCACTGCCACTGTTTTCGATTCACGACAAAGCAAAATCGATCGACCATCACGGACGCAATGTATGTCGGCAGGTGAATACATTACCGGCAGGAAAGGCTTCANCGAG] [+] EMBL AL697436 [ATCCCCCGAGGTTAGTTCAAACTAAGTGTTAGTGTGTTGTATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGTCGACTGGGTACGCATCCCAACGATGGTGGGTGAATGGATTTGGACGCATCGACGCTCGGTTAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCTGCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTCCTTGCTAGGTTCCAACTTCCGGTCCGATCTGCCAACAAGGATCATCGTGCATGGTTGGCAAAGCAGCAAAAGCTCCCCGCTAGCGGCAAAGTATTCGTGATACGTATCTGCTGCTTTGGGACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTTCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGGAGAATGTGTACGTCGTATGGGCACAGNTNNNGGGAGCGCACGTTGCCGGACATAGCTGGCCAAGAGGGTTCAGAATGGACAGTCCATACATCATTGGCTTGATCCGGCACTGCCACTGTTTTCGATTCACGACAAAGCAAAATCGATCGACCATCACGGACGCAATGTATGTCGGCAGGTGAATACATTACCGGCAGGAAAGGCTTCANCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3994#0 CCGGCAACGTATGCGACGAACATTCGTCAGTCGATGGTGGTAACGTTCGGAGCAAGAGAT 60 consensus_3994#1 ------------------------------------------------------------ consensus_3994#0 CGTCATGGAGAAACACTTTCTGTTGGGACTTGTGCTGCTGGCGTTCAAACTTAGTGTTAA 120 consensus_3994#1 --------------------------ATCCCCCGAGGTTAG--TTCAAACTAAGTGTTA- 31 * * * * * ******** ******* consensus_3994#0 GTGTGTTGTAATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGT 180 consensus_3994#1 GTGTGTTGTA-TTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGT 90 ********** ************************************************* consensus_3994#0 CGACTGGGTCCGTATCCCAACGATGGTCGGCGAATGGATTTGGACGCATCGACGCTCGGT 240 consensus_3994#1 CGACTGGGTACGCATCCCAACGATGGTGGGTGAATGGATTTGGACGCATCGACGCTCGGT 150 ********* ** ************** ** ***************************** consensus_3994#0 TAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCT 300 consensus_3994#1 TAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCT 210 ************************************************************ consensus_3994#0 GCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTC 360 consensus_3994#1 GCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTC 270 ************************************************************ consensus_3994#0 CTTGCTAGGTTCCAACTTCCGGTCCGATCTTCCAACAAGGATCATCGTGCATGGTTGGCA 420 consensus_3994#1 CTTGCTAGGTTCCAACTTCCGGTCCGATCTGCCAACAAGGATCATCGTGCATGGTTGGCA 330 ****************************** ***************************** consensus_3994#0 AAGCAGCAAAAGCTCCCCGCTAGCGG-AAAGTATTCGTGATACGTATCTGCTGCTTTGGG 479 consensus_3994#1 AAGCAGCAAAAGCTCCCCGCTAGCGGCAAAGTATTCGTGATACGTATCTGCTGCTTTGGG 390 ************************** ********************************* consensus_3994#0 ACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAG 539 consensus_3994#1 ACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAG 450 ************************************************************ consensus_3994#0 CGGTCGGGTGTGTTCCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAG 599 consensus_3994#1 CGGTCGGGTGTGTTCCC-GTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAG 509 ***************** ****************************************** consensus_3994#0 CAGCATGCCGGGCTGATGATGGAAGAATGTGTACGTCGT-TGGGCACAGTTTGGG--AGC 656 consensus_3994#1 CAGCATGCCGGGCTGATGATGGA-GAATGTGTACGTCGTATGGGCACAGNTNNNGGGAGC 568 *********************** *************** ********* * * *** consensus_3994#0 GCACGTTGCCGG-CATAGCTTGGCAAGAGGGTTCAGAATGGACAGCTGCATACCATCATT 715 consensus_3994#1 GCACGTTGCCGGACATAGCTGGCCAAGAGGGTTCAGAATGGACAGTC-CATAC-ATCATT 626 ************ ******* * ********************** ***** ****** consensus_3994#0 GGCCTTGATCCGGCTACTGCCACTGTTTTCGATTCACGAGAAAGAAAATCTGCATCGACC 775 consensus_3994#1 GGC-TTGATCCGGC-ACTGCCACTGTTTTCGATTCACGACAAAGCAAAATCG-ATCGACC 683 *** ********** ************************ **** *** * ******* consensus_3994#0 ATCAGTGACGCAATGTATGTGG--AGGTGA-TACAT-ACCGGC-GGAGTGGCTTCTCGGT 830 consensus_3994#1 ATCACGGACGCAATGTATGTCGGCAGGTGAATACATTACCGGCAGGAAAGGCTTCANCGA 743 **** ************** * ****** ***** ****** *** ****** * consensus_3994#0 TTNTCGGGATACCGATCGGGACGGNTGACTTATTACACCGAACGGAGGCTCCCATCAACC 890 consensus_3994#1 G----------------------------------------------------------- 744 consensus_3994#0 GGGCTGTGGCGCTTGGCACCGTTGTNGGACTGTGTTCGCACACTCGNTGCTTGGNGCAGC 950 consensus_3994#1 ------------------------------------------------------------ consensus_3994#0 TGTACTGCGNGAGCTCGCTTAGCTAGNAGCCGGTGNGCAAAACTNTGGTGGCCACGACGG 1010 consensus_3994#1 ------------------------------------------------------------ consensus_3994#0 ATATGACACTCGCATGGACGCGACGANATACACGCACCTGCNCGCCCTGTGGACGCATGG 1070 consensus_3994#1 ------------------------------------------------------------ consensus_3994#0 ATNCCCANCGGACT 1084 consensus_3994#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||