These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 934 fasta sequence [GTAGTAGTAGTAGTGGTACTACACTACTACCACTACAACTACAGCAGCGCAATGTAGCTGTGGCAGTATATTTAAATGCTTGAAGGGGGTTCTTCCACGCGGAGGAAGTGTGTGTGTGACGGTGTTCTTAAGATGG-ATTGTTGGGGGGTGCAAATGGGTGCAGCACGTCTCGTTGCACCCTCTTTCGCAGCTTTTCCACAGTAATAGCAGCAGCAGCAGCAGCCGCAGCAGTAGCAGTAGTAATAGTAGTTTGCTAGTGTGTTCCCCTTTAGCTTATTTCAGTATCGTTAAACATCCCTACCGCTTAAATACAACGCACACGACGCAGCACATCGTTCTGTGCACACTCTTACCAATTACCCCCGCATCCGATGGGTAACCGGAAATGCTGCACACTGGTGCTGGTGCGCTTCCCTACCTTACAATAA----TAAAAAAAAACGATCCTAATCCTGCCACTTACTATCGTAGAGCTAATAGTAGTACTCTTTCATCATTCACAACACAGATTTACGCGCACACACAACGCAGCGGCGGTCCGAGGGGGGAGGGGGG-------AAAGCTTCCTTGCTCAATATTCAATTAAACACTTCACTTATCTACAATGCAAAACTCTCTATTGCAAACAATCCCGTTTTGGGGTGTGGGATCGTCCCTCTCGTTCCCTCTCCTCCTAACGCAACAATGCTGGAAGATGTACAACAGAAGAGAGAAAAAAAAAACGCGATCCTCTAACAAGCTAACTGCCTTAAACGTAAAACAATTCATTACTTCCGGGTTTTCACTTCACGTTACAGTTTACTGTACAAAAAAAAACGACTCTAGCTGTATAATTAGGTGAGGAATGAAGTATTGTTACAATCTGCCAAAACACACACGCACACCTTCAACTTTGGGTGTGTATGTGTGAGTATATGTCTGAGTGTGTGTTTTTAAAATA] [+] EMBL CNS09O5N [GTAGTAGTAGTAGTGGTACTACACTACTACCACTACAACTACAGCAGCGCAATGTAGCTGTGGCAGTATATTTAAATGCTTGAAGGGGGTTCTTCCACGCGGAGGAAGTGTGTGTGTGACGGTGTTCTTAAGATGG ATTGTTGGGGGGTGCAAATGGGTGCAGCACGTCTCGTTGCACCCTCTTTCGCAGCTTTTCCACAGTAATAGCAGCAGCAGCAGCAGCCGCAGCAGTAGCAGTAGTAATAGTAGTTTGCTAGTGTGTTCCCCTTTAGCTTATTTCAGTATCGTTAAACATCCCTACCGCTTAAATACAACGCACACGACGCAGCACATCGTTCTGTGCACACTCTTACCAATTACCCCCGCATCCGATGGGTAACCGGAAATGCTGCACACTGGTGCTGGTGCGCTTCCCTACCTTACAATAA TAAAAAAAAACGATCCTAATCCTGCCACTTACTATCGTAGAGCTAATAGTAGTACTCTTTCATCATTCACAACACAGATTTACGCGCACACACAACGCAGCGGCGGTCCGAGGGGGGAGGGGGG AAAGCTTCCTTGCTCAATATTCAATTAAACACTTCACTTATCTACAATGCAAAACTCTCTATTGCAAACAATCCCGTTTTGGGGTGTGGGATCGTCCCTCTCGTTCCCTCTCCTCCTAACGCAACAATGCTGGAAGATGTACAACAGAAGAGAGAAAAAAAAAACGCGATCCTCTAACAAGCTAACTGCCTTAAACGTAAAACAATTCATTACTTCCGGGTTTTCACTTCACGTTACAGTTTACTGTACAAAAAAAAACGACTCTAGCTGTATAATTAGGTGAGGAATGAAGTATTGTTACAATCTGCCAAAACACACACGCACACCTTCAACTTTGGGTGTGTATGTGTGAGTATATGTCTGAGTGTGTGTTTTTAAAATA] [-] EMBL BX622296 [ ACGGTGTTCTTAAGATGGAATTGTTGGGGGGTGCAAATGGGTGCTGCACGTCTCGTTGCACCTTCTTTCGCAGCTTTTCCACAGTAATAGTAGTAGCAGTAGTAGTCGTAGTAGTAGTAGTAGTAATAGTAGTTTGCTAGTGTGTTCCCCTTTAGCTTATTTCAGTATCGTTAAACATCCCTACCGCTTAAATACACCGCACACGACGCAGCACATCGTTTTGTGCACACTCTTACCAATTACCCCCGCATCCGATGGGTAACCGGAAATGCTGCACACTGGTGCTGGTGCGCTTCCCTACCTTACAATAATAATTAAAAAAAAACGATCCTAATCCTGCCACTTACTATCGTAGAGCTAATAGTAGTACTCTTTCATCATTCACAACACAGATATACGCGCACACACAACGCAGCGGCGGTCCGAGGGGGGGGGGGGGGGTGGGTGAAGCTTCCTTGCTCAATATTCAATTAAACACTTCACTTATCTACAATGCAAAACTCCCTAATGCAAACAATCCCGTTTTGGGG GTGGGATCGTCCCTCTCGTTCCCTCTCCTCCTAACGCAACAATGCTGGAAGATGTACAACAGAAGAGAG ] consensusID : consensus_3996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CGGCGAACTTGCCAACCACCCTTTNCCCAGATANTGTTTCCCCACAAACGTTCGTTTGGGAATAACGCCCCCAGTTNTTNGGCTCTATTGCGGATTTCCGGGGACCCANGACTNTTGANGCCCGNCAGGNCATTTTTTACCCTTGNTTGTCGTTGTAATGTTNTCTNTTCCCCTTCGTTGTACTGCCGTGAAGCCCCTTTTGTAACCGGTACTGTTCTCTACTTCGCGCCAGTAGGAGGCCGCTTAGAAGCCACCCGGTGTCCCCAANCANGTATGAACAANGGGGGGAAGGTTTGGGAATTCTCTTTGGNGTGGTTGTTTTTGCCCCCCCTTTCTCCGGCGGATTCGGTTGCATTGTCGTTTAGCGCTCTCCTTCTCGCAGTGTTTTAAGGGTAGCAGCAATTTGACAAAGTAAAATGGTAGTGGTAGTAGTAGTAGTAGTAGTAGTGGTACTACACTACTACTACTACAACTACAGCAGCGCAATGTAGCTGTGGCAGTATATTTAAATGTTGAAAGGGGTTCTTCCACGCGTAGGAAGTGTGTGTGTGACGGTGTTCTTAAGATGGATTGTTGGGGGGTGCAAATGGGTGCTGCACGTCTCGTTGCACCTTCTTTCGCAGCTTAACCCCTGGGC] [-] EMBL AL697480 [CGGCGAACTTGCCAACCACCCTTTNCCCAGATANTGTTTCCCCACAAACGTTCGTTTGGGAATAACGCCCCCAGTTNTTNGGCTCTATTGCGGATTTCCGGGGACCCANGACTNTTGANGCCCGNCAGGNCATTTTTTACCCTTGNTTGTCGTTGTAATGTTNTCTNTTCCCCTTCGTTGTACTGCCGTGAAGCCCCTTTTGTAACCGGTACTGTTCTCTACTTCGCGCCAGTAGGAGGCCGCTTAGAAGCCACCCGGTGTCCCCAANCANGTATGAACAANGGGGGGAAGGTTTGGGAATTCTCTTTGGNGTGGTTGTTTTTGCCCCCCCTTTCTCCGGCGGATTCGGTTGCATTGTCGTTTAGCGCTCTCCTTCTCGCAGTGTTTTAAGGGTAGCAGCAATTTGACAAAGTAAAATGGTAGTGGTAGTAGTAGTAGTAGTAGTAGTGGTACTACACTACTACTACTACAACTACAGCAGCGCAATGTAGCTGTGGCAGTATATTTAAATGTTGAAAGGGGTTCTTCCACGCGTAGGAAGTGTGTGTGTGACGGTGTTCTTAAGATGGATTGTTGGGGGGTGCAAATGGGTGCTGCACGTCTCGTTGCACCTTCTTTCGCAGCTTAACCCCTGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3996#0 GTAGTAGTAGTAGTGGTACTACACTACTACCACTACAACTACAGCAGCGCAATGTAGCTG 60 consensus_3996#1 -----------------------CGGCGAACTTGCCAACCACCCTTTNCCCAGATAN-TG 36 * * * * **** ** * * ** ** consensus_3996#0 TGGCAGTATATTTAAATGCTTGAAGGGGGTTCTTCCACGCGGAGGAAGTGTGTGTGTGAC 120 consensus_3996#1 TTTCCCCACAAACGTTCGTTTGGGAATAACGCCCCCAGTTNTTNGGC-----TCTATTGC 91 * * * * * *** * *** * * * * * consensus_3996#0 GGTGTTCTTAAGAT---GGATTGTTGGGGGGTGCAAATGGGTGCAGCACGTCTCGTTGCA 177 consensus_3996#1 GGATTTCCGGGGACCCANGACTNTTGANGCCCGNCAGGNCATTTTTTACCCTTGNTTGT- 150 ** *** ** ** * *** * * * * ** * *** consensus_3996#0 CCCTCTTTCGCAGCTTTTCCACAGTAATAGCAGCAGCAGCAGCAGCCGCAGCAGTAGCAG 237 consensus_3996#1 CGTTGTAATGTTNTCTNTTCCCCTTCGTTGTA-CTGCCGT-GAAGCCCCTTTTGTAACCG 208 * * * * * * * * * * * * * ** * * **** * *** * * consensus_3996#0 TAGTAATAGTAGTTTGCTAGTGTGTTCCCCTTT-AGCTTATTTCAGTATCGTTAAACATC 296 consensus_3996#1 --GTACT----GTTCTCTACTTCGCGCCAGTAGGAGGCCGCTTAGAAGCCACCCGGTGTC 262 *** * *** *** * * ** * ** ** * ** consensus_3996#0 CCTA-CCGCTTAAATACAACGCACACGACGCAGCACATCGTTCTGTGCACACTCTTACCA 355 consensus_3996#1 CCCAANCANGTATGAACAANGGGGGGAAGGTTTGGGAATTCTCTTTG-GNGTGGTTGTTT 321 ** * * ** **** * * * * *** ** ** consensus_3996#0 ATTACCCCCGCATCCGATGGGTAACCGGAAATGCTGCACACTGGTGCTGGTGCGCTTCCC 415 consensus_3996#1 -TTGCCCCCCCTTTCTCCGG-----CGGATTCGGT-TGCATTGTCGTTTA-GCGCTCTCC 373 ** ***** * * * ** **** * * ** ** * * ***** ** consensus_3996#0 TACCTTACAATAATAAAAAAAAACGATCCTAATCCTGCCACTTACTATCGTAGAGCTAAT 475 consensus_3996#1 T-TCTCGCAGTGTTTTAAGGGTAGCAGC--AATTTGACAAAGTAAAATGGTAGTGGTAGT 430 * ** ** * * ** * * * *** * * ** ** **** * ** * consensus_3996#0 AGTAGTACTCTTTCATCATTCACAACACAGATTTACGCGCACACACAACGCAGCGGCGGT 535 consensus_3996#1 AGTAGTAGTAGT--AGTAGTGGTACTACACTACTACTACTACAACTACAGCAGCGCAATG 488 ******* * * * * * * *** *** *** * ****** consensus_3996#0 CCGAGGGGGGAGGGGGGAAAGCTTCCTTGCTCAATATTCAATTAAACACTTCACTTATCT 595 consensus_3996#1 TAGCTGTGGCAGTATATTTAAATG--TTGAAAGGGGTTCTTCCACGCGTAGGAAGTGTGT 546 * * ** ** * * *** *** * * * * * * consensus_3996#0 ACAATGCAAAACTCTCTATTGCAAACAATCCCGTTTTGGGGTGTGGGATCGTCCCTCTCG 655 consensus_3996#1 GTGTGACGGTGTTCT-TAAGATGGATTGTTGGGGGGTGCAAATGGGTGCTGCACGTCTCG 605 * *** ** * * * ** ** * * ***** consensus_3996#0 TTCCCTCTCCTCCTAACGCAACAATGCTGGAAGATGTACAACAGAAGAGAGAAAAAAAAA 715 consensus_3996#1 TTGCACCTTCTTTCGCAGCTTAACCCCTGGGC---------------------------- 637 ** * ** ** ** * **** consensus_3996#0 ACGCGATCCTCTAACAAGCTAACTGCCTTAAACGTAAAACAATTCATTACTTCCGGGTTT 775 consensus_3996#1 ------------------------------------------------------------ consensus_3996#0 TCACTTCACGTTACAGTTTACTGTACAAAAAAAAACGACTCTAGCTGTATAATTAGGTGA 835 consensus_3996#1 ------------------------------------------------------------ consensus_3996#0 GGAATGAAGTATTGTTACAATCTGCCAAAACACACACGCACACCTTCAACTTTGGGTGTG 895 consensus_3996#1 ------------------------------------------------------------ consensus_3996#0 TATGTGTGAGTATATGTCTGAGTGTGTGTTTTTAAAATA 934 consensus_3996#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||