These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [AGATCGCCGACGGGTTAAATGTGTGTGATTATTACATANAAATATTAGCATTATTTGATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGAATAAAGCCAGGAAATACAATAAAACCAAAAATTAGTCAGGAAAGCATCAACCCAAAAATGGAAACCAAAAAACAAATGAAGCAAAAACAAATGAACAAACAATTTATTTATTGCANAATGATTCTGATCGTGCGCTGCGATATTCGATAGTGGATTTNTAATTGTAACCCAACTACCACTGTTTGGAGTGCTAGCGTNTTGAACTTTNCGCAATCATTCATGCTGCGCTTACTNTANATAAGTTAACTGAAACGAGGAGCAATACTAGCCTTCAATTATTTCCCTTAACCGCGTGACACTGTAACAAACGTGCTCAGCATACGTGTTGAAAGCATCTTACTTTATTCATCACACTTCAGAACGTTAACATCGAACACCGCATGTGTTATACACTCTGCTAAACTTTTGTTAAAC] [+] EMBL AL697490 [AGATCGCCGACGGGTTAAATGTGTGTGATTATTACATANAAATATTAGCATTATTTGATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGAATAAAGCCAGGAAATACAATAAAACCAAAAATTAGTCAGGAAAGCATCAACCCAAAAATGGAAACCAAAAAACAAATGAAGCAAAAACAAATGAACAAACAATTTATTTATTGCANAATGATTCTGATCGTGCGCTGCGATATTCGATAGTGGATTTNTAATTGTAACCCAACTACCACTGTTTGGAGTGCTAGCGTNTTGAACTTTNCGCAATCATTCATGCTGCGCTTACTNTANATAAGTTAACTGAAACGAGGAGCAATACTAGCCTTCAATTATTTCCCTTAACCGCGTGACACTGTAACAAACGTGCTCAGCATACGTGTTGAAAGCATCTTACTTTATTCATCACACTTCAGAACGTTAACATCGAACACCGCATGTGTTATACACTCTGCT ] [+] EMBL BX615445 [ aATAAGTTAACTGAAA GAGGAGCAATACTAGCTTTCAATTATTTCCCTTAACCGCGTGACACTGTAA AAACGTGCTCAGCATACGTGTTGAAAGCATCTT CTTTATTCATCACACTTCAGAACGTTAA ATCGAACACCGCATGTGTTATACACTCTGTTAAACTTTTGTTAAAC] consensusID : consensus_3997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CAGAATCGCCACGAGGNGCAAATGTGTGTGATTATTACATAAAAATATTAGCATTATTTGATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGAATAAAGCCAGGAAATACAATAAAACAAAAATTAGTCAGGAAAGCATCAACCCAAAAATGGAAACCAAAAAACAAATGAAGCAAAAGACAAATGAACAAACAATTTATTTATTGCCAAATGATTCTGATCGTGCGCTGCGATATTCGATAGCTGGATTTTAAGTTGTAACCCAACTACCACTGATTCTGGAGTGCTAGCGTNATTAGAACTTTTNCGCNAAGTCATTCATGGTGCGACTTACTTGAATAAGTTCAACNTGAAAAGAGGAGCAATTACTAGGCCGTTCNANTGTATTGCCCGTTAAGCACAGCGGTGACACATGTAG] [+] EMBL BX469085 [CAGAATCGCCACGAGGNGCAAATGTGTGTGATTATTACATAAAAATATTAGCATTATTTGATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGAATAAAGCCAGGAAATACAATAAAACAAAAATTAGTCAGGAAAGCATCAACCCAAAAATGGAAACCAAAAAACAAATGAAGCAAAAGACAAATGAACAAACAATTTATTTATTGCCAAATGATTCTGATCGTGCGCTGCGATATTCGATAGCTGGATTTTAAGTTGTAACCCAACTACCACTGATTCTGGAGTGCTAGCGTNATTAGAACTTTTNCGCNAAGTCATTCATGGTGCGACTTACTTGAATAAGTTCAACNTGAAAAGAGGAGCAATTACTAGGCCGTTCNANTGTATTGCCCGTTAAGCACAGCGGTGACACATGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3997#0 --AGATCGCCGACGGGT-TAAATGTGTGTGATTATTACATANAAATATTAGCATTATTTG 57 consensus_3997#1 CAGAATCGCCACGAGGNGCAAATGTGTGTGATTATTACATAAAAATATTAGCATTATTTG 60 ****** ** ********************** ****************** consensus_3997#0 ATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCG 117 consensus_3997#1 ATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCG 120 ************************************************************ consensus_3997#0 TGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAG 177 consensus_3997#1 TGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAG 180 ************************************************************ consensus_3997#0 AGAATAAAGCCAGGAAATACAATAAAACCAAAAATTAGTCAGGAAAGCATCAACCCAAAA 237 consensus_3997#1 AGAATAAAGCCAGGAAATACAATAAAAC-AAAAATTAGTCAGGAAAGCATCAACCCAAAA 239 **************************** ******************************* consensus_3997#0 ATGGAAACCAAAAAACAAATGAAGCAAAA-ACAAATGAACAAACAATTTATTTATTGCAN 296 consensus_3997#1 ATGGAAACCAAAAAACAAATGAAGCAAAAGACAAATGAACAAACAATTTATTTATTGCCA 299 ***************************** **************************** consensus_3997#0 AATGATTCTGATCGTGCGCTGCGATATTCGATAG-TGGATTTNTAATTGTAACCCAACTA 355 consensus_3997#1 AATGATTCTGATCGTGCGCTGCGATATTCGATAGCTGGATTTTAAGTTGTAACCCAACTA 359 ********************************** ******* * ************** consensus_3997#0 CCACTG--TTTGGAGTGCTAGCGTNTT--GAACTTTNC---GCAATCATTCATGCTGCGC 408 consensus_3997#1 CCACTGATTCTGGAGTGCTAGCGTNATTAGAACTTTTNCGCNAAGTCATTCATGGTGCGA 419 ****** * *************** * ******* * ********* **** consensus_3997#0 TTACTNTANATAAGTTAA--CTGAAACGAGGAGCAAT-ACTAGCC--TTCAATTATTTCC 463 consensus_3997#1 CTTACTTGAATAAGTTCAACNTGAAAAGAGGAGCAATTACTAGGCCGTTCNANTGTATTG 479 * * ******* * ***** ********** ***** * *** * * * * consensus_3997#0 CTTAACCGCGTGACACTGTAACAAACGTGCTCAGCATACGTGTTGAAAGCATCTTACTTT 523 consensus_3997#1 CCCG-TTAAGCACAGCGGTGACACATGTAG------------------------------ 508 * * * ** *** * ** consensus_3997#0 ATTCATCACACTTCAGAACGTTAACATCGAACACCGCATGTGTTATACACTCTGCTAAAC 583 consensus_3997#1 ------------------------------------------------------------ consensus_3997#0 TTTTGTTAAAC 594 consensus_3997#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||