These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCGGACGCGTGGGGTGTCTAGCGCGCTGTGTGCACGTAGCCAATTTTCACGTTCAAGAACACACTCACGTACAAATGCACTCGTGTGTCGCAAAGGGCAGGATGCAGTAACTCGTAGACCATTAGGGTTGAATGGTTATGGGCATTACAGGTTGACCTCGTGCCCTGAAATGGGCAGCAAACAACGAGGCAAGCAGCTTGTCTTTGTGTTCCCGATTCGGAAGTATCTGGCGGAAGCTGCAGCGACGAGAAGCCCATGGTGTCGTCCCGAGATGCTCATTTTTCCTCCCTCTCCAGTGAACGGTATCTCTTATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTTGCACAGGCTGACACCCTGACCTAAGCCGCTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCTCTTGAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGCAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGACACGGGAGTAAAGTTTAAACGAAACCAACCAA] [+] EMBL BM597139 [CCGCGGACGCGTGGGGTGTCTAGCGCGCTGTGTGCACGTAGCCAATTTTCACGTTCAAGAACACACTCACGTACAAATGCACTCGTGTGTCGCAAAGGGCAGGATGCAGTAACTCGTAGACCATTAGGGTTGAATGGTTATGGGCATTACAGGTTGACCTCGTGCCCTGAAATGGGCAGCAAACAACGAGGCAAGCAGCTTGTCTTTGTGTTCCCGATTCGGAAGTATCTGGCGGAAGCTGCAGCGACGAGAAGCCCATGGTGTCGTCCCGAGATGCTCATTTTTCCTCCCTCTCCAGTGAACGGTATCTCTTATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTTGCACAGGCTGACACCCTGACCTAAGCCGCTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCTCTTGAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGCAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGACACGGGAGTAAAGTTTAAACGAAACCAACCAA] consensusID : consensus_4009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 474 fasta sequence [CCGATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTCTGACCTAAACAGACTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCCCTTAAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGTAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGAAACGGGAGTAAAGATTAAACGAAACCAACCAACAACAAAAAAAAAGAGAAACACATCCCGTAAAAGCATGTTTGTATTAGCGATAAAGGAAACGATAATGATCAACACGTTGATCGTAGATACATAGTGAATGAGAATTATCTTGGCA] [+] EMBL BM653061 [CCGATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTCTGACCTAAACAGACTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCCCTTAAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGTAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGAAACGGGAGTAAAGATTAAACGAAACCAACCAACAACAAAAAAAAAGAGAAACACATCCCGTAAAAGCATGTTTGTATTAGCGATAAAGGAAACGATAATGATCAACACGTTGATCGTAGATACATAGTGAATGAGAATTATCTTGGCA] [+] EMBL BM636538 [ AATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTCTGACCTAAACAGACTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCCCTTAAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4009#0 CCGCGGACGCGTGGGGTGTCTAGCGCGCTGTGTGCACGTAGCCAATTTTCACGTTCAAGA 60 consensus_4009#1 ------------------------------------------------------------ consensus_4009#0 ACACACTCACGTACAAATGCACTCGTGTGTCGCAAAGGGCAGGATGCAGTAACTCGTAGA 120 consensus_4009#1 ------------------------------------------------------------ consensus_4009#0 CCATTAGGGTTGAATGGTTATGGGCATTACAGGTTGACCTCGTGCCCTGAAATGGGCAGC 180 consensus_4009#1 ------------------------------------------------------------ consensus_4009#0 AAACAACGAGGCAAGCAGCTTGTCTTTGTGTTCCCGATTCGGAAGTATCTGGCGGAAGCT 240 consensus_4009#1 ------------------------------------------------------------ consensus_4009#0 GCAGCGACGAGAAGCCCATGGTGTCGTCCCGAGATGCTCATTTTTCCTCCCTCTCCAGTG 300 consensus_4009#1 ------------------------------------------------------------ consensus_4009#0 AACGGTATCTCTTATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCC 360 consensus_4009#1 ----------CCGATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCC 50 * *********************************************** consensus_4009#0 ATATTAGACAGATAAAGACACACACACACACACATCAGCACGTGTGATTGTATCCTAAAT 420 consensus_4009#1 ATATTAGACAGATAAAGACACACACACACACA--TCAGCACGTGTGATTGTATCCTAAAT 108 ******************************** ************************** consensus_4009#0 GGCACAGGATCGACTTGCACAGGCTGACACCCTGACCTAAGCCG-CTACTACCCACATGG 479 consensus_4009#1 GGCACAGGATCGACT----------------CTGACCTAAACAGACTACTACCCACATGG 152 *************** ********* * * *************** consensus_4009#0 CTACAGGTGTAGGAGGCAATATTTCTCTTGAAACAGAACAGGAAAGCTGCAAGGAAAGCT 539 consensus_4009#1 CTACAGGTGTAGGAGGCAATATTTCCCTTAAAACAGAACAGGAAAGCTGCAAGGAAAGCT 212 ************************* *** ****************************** consensus_4009#0 CCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGAT 599 consensus_4009#1 CCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGAT 272 ************************************************************ consensus_4009#0 CACACGTAAGCAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGACACGGG 659 consensus_4009#1 CACACGTAAGTAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGAAACGGG 332 ********** ******************************************* ***** consensus_4009#0 AGTAAAGTTTAAACGAAACCAACCAA---------------------------------- 685 consensus_4009#1 AGTAAAGATTAAACGAAACCAACCAACAACAAAAAAAAAGAGAAACACATCCCGTAAAAG 392 ******* ****************** consensus_4009#0 ------------------------------------------------------------ consensus_4009#1 CATGTTTGTATTAGCGATAAAGGAAACGATAATGATCAACACGTTGATCGTAGATACATA 452 consensus_4009#0 ---------------------- consensus_4009#1 GTGAATGAGAATTATCTTGGCA 474 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||