These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAAGCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCTGGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTCCGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGAGGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAAGAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTTCTGGCTGATGGTGTTCAAGAACACGGAAGCGCTGGCCGAGCTGGTGCACCCGCACGACGAGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGGAGCCGATGTCGTACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAGAAGTACTTCCTGCG] [+] EMBL BM630837 [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAAGCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCTGGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTCCGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGAGGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAAGAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTTCTGGCTGATGGTGTTCAAGAACACGGAAGCGCTGGCCGAGCTGGTGCACCCGCACGACGAGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGGAGCCGATGTCGTACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAGAAGTACTTCCTGCG] consensusID : consensus_401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [CCGCCCACGCGTCCGCAAGATGTCGAACAACATTGCAATCCTCCTGCTGGCTGTTCTGGTTGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATCACTTGGTCCATCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT] [+] EMBL BM615070 [CCGCCCACGCGTCCGCAAGATGTCGAACAACATTGCAATCCTCCTGCTGGCTGTTCTGGTTGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATCACTTGGTCCATCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_401#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAA 60 consensus_401#1 ------------------------------------------------------------ consensus_401#0 GCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCT 120 consensus_401#1 ------------------------------------------------------------ consensus_401#0 GGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTC 180 consensus_401#1 ------------------------------------------------------------ consensus_401#0 CGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGA 240 consensus_401#1 ------------------------------------------------------------ consensus_401#0 GGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAA 300 consensus_401#1 ------------------------------------------------------------ consensus_401#0 GAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTT 360 consensus_401#1 ------------------------------------------------------------ consensus_401#0 CTGGCTGATGGTGTTCAAGAACACGGAAG-CGCTGGCCGAGCTGGTGCACCCGCACGACG 419 consensus_401#1 ----------CCGCCCACGCGTCCGCAAGATGTCGAACAACAT--TGCAATCCTCCTGCT 48 * ** * ** *** * * * * * **** * * * consensus_401#0 AGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGG-AGCCGATGTCG 478 consensus_401#1 GGCTGTT-CTGGT-TGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATC- 105 ** * * **** * * * * ** **** * ** * * * ** ** consensus_401#0 TACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAG 538 consensus_401#1 -ACTTGGTCCA--TCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT------------- 149 ** ** ** * ****** * *** * * * * *** ** consensus_401#0 AAGTACTTCCTGCG 552 consensus_401#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||