cluster # 4021

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Anopheles gambiae
cluster # 4021 cluster # 4021 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4021#0 length = 698 sequences # 1

consensus_4021#1 length = 621 sequences # 2

consensusID : consensus_4021#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence

                              [CCCTTTGGATCAGCTGTTGTCACCATTGTTTTGCTTTGTGCCTTTCTTTATGATGTACGGTTTAGTTAGTTTTATGATGCAATTTCCCAACCTCCCCCTCAATGCACACACACAGACACAAACACGCGCAAATGGTGTTGCGTATCGTATCGTGGCCGGCGTTTTGTACGTGCAGCGATTCTCTAATTGATCGTTCGATTAAAGCATCAAATAATAAAGGCAGGAACCAGCTACCACCTGTCCCAAGTTGACCTATATTTAAATATGGAAGGAACCGAGGTGGTTCGTTGACACACTGTTCACATAACACGCACATGAAATCGATATTACGATCACTTTTTTGTCGGTACGATTTTCGTTCTCCGGTCGCGGATTGGCTGTGATTTCAAAGTGTCCTGTGTCCTTCATCTTACGCCGTTTACTACTACGCTTACACTGCCCGGCAAGTGATACAGGCTGGTGTGAGAGTCGAAACCCAATAGGTATTATGATACATAGCGTGTGCGTTGCATAGCTAGTGTAAGAAGAAAAGGTAGACAATTTTATTAGCTGTTAAGGTATGCGACCGAGTGATATGAAGCAAACACCACCGCTACTGCTGTTGGCAGGTTTTAAGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCCACCGACGAAGCTAGACGGTTTTACTAGCCCGCACGAACATG]

[+] EMBL BX602474             [CCCTTTGGATCAGCTGTTGTCACCATTGTTTTGCTTTGTGCCTTTCTTTATGATGTACGGTTTAGTTAGTTTTATGATGCAATTTCCCAACCTCCCCCTCAATGCACACACACAGACACAAACACGCGCAAATGGTGTTGCGTATCGTATCGTGGCCGGCGTTTTGTACGTGCAGCGATTCTCTAATTGATCGTTCGATTAAAGCATCAAATAATAAAGGCAGGAACCAGCTACCACCTGTCCCAAGTTGACCTATATTTAAATATGGAAGGAACCGAGGTGGTTCGTTGACACACTGTTCACATAACACGCACATGAAATCGATATTACGATCACTTTTTTGTCGGTACGATTTTCGTTCTCCGGTCGCGGATTGGCTGTGATTTCAAAGTGTCCTGTGTCCTTCATCTTACGCCGTTTACTACTACGCTTACACTGCCCGGCAAGTGATACAGGCTGGTGTGAGAGTCGAAACCCAATAGGTATTATGATACATAGCGTGTGCGTTGCATAGCTAGTGTAAGAAGAAAAGGTAGACAATTTTATTAGCTGTTAAGGTATGCGACCGAGTGATATGAAGCAAACACCACCGCTACTGCTGTTGGCAGGTTTTAAGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCCACCGACGAAGCTAGACGGTTTTACTAGCCCGCACGAACATG]




>consensus_4021#0
CCCTTTGGATCAGCTGTTGTCACCATTGTTTTGCTTTGTGCCTTTCTTTATGATGTACGG
TTTAGTTAGTTTTATGATGCAATTTCCCAACCTCCCCCTCAATGCACACACACAGACACA
AACACGCGCAAATGGTGTTGCGTATCGTATCGTGGCCGGCGTTTTGTACGTGCAGCGATT
CTCTAATTGATCGTTCGATTAAAGCATCAAATAATAAAGGCAGGAACCAGCTACCACCTG
TCCCAAGTTGACCTATATTTAAATATGGAAGGAACCGAGGTGGTTCGTTGACACACTGTT
CACATAACACGCACATGAAATCGATATTACGATCACTTTTTTGTCGGTACGATTTTCGTT
CTCCGGTCGCGGATTGGCTGTGATTTCAAAGTGTCCTGTGTCCTTCATCTTACGCCGTTT
ACTACTACGCTTACACTGCCCGGCAAGTGATACAGGCTGGTGTGAGAGTCGAAACCCAAT
AGGTATTATGATACATAGCGTGTGCGTTGCATAGCTAGTGTAAGAAGAAAAGGTAGACAA
TTTTATTAGCTGTTAAGGTATGCGACCGAGTGATATGAAGCAAACACCACCGCTACTGCT
GTTGGCAGGTTTTAAGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCCACC
GACGAAGCTAGACGGTTTTACTAGCCCGCACGAACATG

consensusID : consensus_4021#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 621
fasta sequence

                              [CCCACGCGTCCGGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCACCGACCGAAGTTAGACGGTTTTACTAGCCCGCACGAACATGTTGTGTTTGCTCCGTTTCATAACGAACCGCTTCACTAGTATCGTAAAGCCCATTACGAAATATGCTTCATAACTCAGCCACCAGAACTAGAGAGACGCACTACACACGTTTAAAGTTCGAGATTTGGCCCACCTGGCCCGAAACTGCTGCACTCTTTTATCCACTAGCTGATCTC----ATGTTTCCTTTTCCATTGGATTTTGAAAGACGTGAGTTTGTAGTGAAGATTGAAAGCATACTGACCGTACCGAAACCGGTTTCGGGCTGCATTGTGCGGGACCGGAACTGTTGGCATTGAAAACGATCATCCTTGTCCGTGGAATGCGTCCGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAGAGGACCCGCGTGG-AGGCGAGGATGCAATCTGTAGGGTGCAGAGGGTGACATTGATCAGTGTGTGCAGGGTAATGCACTATGCAGTTAAGTGCAGTGAACGCAATAGCCAAGGTTATAGCGAATTTAAATGAAGTGTATGTAATGAATAAAATGATTTTTTTTAT]

[+] EMBL BM596763             [CCCACGCGTCCGGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCACCGACCGAAGTTAGACGGTTTTACTAGCCCGCACGAACATGTTGTGTTTGCTCCGTTTCATAACGAACCGCTTCACTAGTATCGTAAAGCCCATTACGAAATATGCTTCATAACTCAGCCACCAGAACTAGAGAGACGCACTACACACGTTTAAAGTTCGAGATTTGGCCCACCTGGCCCGAAACTGCTGCACTCTTTTATCCACTAGCTGATCTC    ATGTTTCCTTTTCCATTGGATTTTGAAAGACGTGAGTTTGTAGTGAAGATTGAAAGCATACTGACCGTACCGAAACCGGTTTCGGGCTGCATTGTGCGGGACCGGAACTGTTGGCATTGAAAACGATCATCCTTGTCCGTGGAATGCGTCCGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAGAGGACCCGCGTGG AGGCGAGGATGCAATCTGTAGGGTGCAGAGGGTGACATTGATCAGTGTGTGCAGGGT                                                                                              ]
[+] EMBL BM643624             [                               ccgCTCCAATTGAAGTGGAACCA  GAC   AGTTAGACGGTTTTACTAGTCCGCACGAACATGTTGTGTTTGCTCCGTTTCATAACGAACCGCTCCACTAGTATCGTAAAGCCCATTACGAAATATGCTTCATAACTCGGCCACCAGAACTAGAGAGACGCGCTAGACACGTTTAAAGTTCGAGA  TCGCCCGCCTGGCCCGAAACTGCTGCACTCTTTTATCCACTAGCTGATCTCATGGATGTTTCCTTTTCCATTGGATTTTGAACGACGTGAGTTTGTAGTGAAGATATAAAGCATGCTGACCGTACCGAAACCGGTTTTGGGCTGCATTGTGAGGGACCGGAAATGTTGGCATTGAAAACGATCATCCTTGTCCGTGGAATGCGTCCGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAGAGGACCCGCGTGGAAGGCGTGGATGCAACCTGTAGGGTGCAGAGGGTGGCATTGATCAGTGTGTGCAGGGTAATGCACTATGCAGTTAAGTGCAGTGAACGCAATAGCCAAGGTTATAGCGAATTTAAATGAAGTGTATGTAATGAATAAAATGATTTTTTTTAT]




>consensus_4021#1
CCCACGCGTCCGGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCACCGACC
GAAGTTAGACGGTTTTACTAGCCCGCACGAACATGTTGTGTTTGCTCCGTTTCATAACGA
ACCGCTTCACTAGTATCGTAAAGCCCATTACGAAATATGCTTCATAACTCAGCCACCAGA
ACTAGAGAGACGCACTACACACGTTTAAAGTTCGAGATTTGGCCCACCTGGCCCGAAACT
GCTGCACTCTTTTATCCACTAGCTGATCTCATGTTTCCTTTTCCATTGGATTTTGAAAGA
CGTGAGTTTGTAGTGAAGATTGAAAGCATACTGACCGTACCGAAACCGGTTTCGGGCTGC
ATTGTGCGGGACCGGAACTGTTGGCATTGAAAACGATCATCCTTGTCCGTGGAATGCGTC
CGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAGAGGACCCGCGTGGAGGCGAGGAT
GCAATCTGTAGGGTGCAGAGGGTGACATTGATCAGTGTGTGCAGGGTAATGCACTATGCA
GTTAAGTGCAGTGAACGCAATAGCCAAGGTTATAGCGAATTTAAATGAAGTGTATGTAAT
GAATAAAATGATTTTTTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4021#0      CCCTTTGGATCAGCTGTTGTCACCATTGTTTTGCTTTGTGCCTTTCTTTATGATGTACGG 60
consensus_4021#1      ----------------------------------CCCACGCGTCCGGTGA--ATGTGAAA 24
                                                             ** *    * *  ****    

consensus_4021#0      TTTAGTTAGTTTTATGATGCAATTTCCCAACCTCCCCCTCAATGCACACACACAGACACA 120
consensus_4021#1      ACGAAACGGTCTCCAATTGAAGTG---GAACCACCGACCGAAGTTAGACGGTTT--TACT 79
                         *    ** *     ** * *     **** **  *  **   * **        ** 

consensus_4021#0      AACACGCGCAAATGGTGTTGCGTATCGTATCGTGGCCGGCGTTTTGTACGTGCAGCGATT 180
consensus_4021#1      AGCCCGCACGAACA-TGTTGTGTTTGCTC----------CGTTTCATA-ACGAACCGCTT 127
                      * * *** * **   ***** ** *  *           *****  **   * * ** **

consensus_4021#0      CTCTAATTGATCGTTCGATTAAAGCATCAAATAATAAAGGCAGGAAC-CAGCTACCACCT 239
consensus_4021#1      CACTAGT--ATCGTAAAGCC----CATTACGAAATATGCTTCATAACTCAGCCACCAGAA 181
                      * *** *  *****          *** *   ****        *** **** ****   

consensus_4021#0      GTCCCAAGTTGACCTATATTTAAATATGGAAGGA-ACCGAGGTGGTTCGTTGACACACTG 298
consensus_4021#1      CTAGAGAGACGCACTACACACGTTTAAAGTTCGAGATTTGGCCCACCTGGCCCGAAACTG 241
                       *    **  *  *** *      **  *   ** *    *       *     * ****

consensus_4021#0      TTCACATAACACGCACATGAAATCGATATTACGATCACTTTTTTGTCGG--TACGATTTT 356
consensus_4021#1      CTGCACTCTTTTATCCACTAGCT-GATCTCATGTTTCCTTTTCCATTGGATTTTGAAAGA 300
                       *    *        **  *  * *** * * * *  *****   * **  *  **    

consensus_4021#0      CGTTCTCCGGTCGCGGATTGGCTGTGATTTCAAAGTGTCCTGTGTCC---TTCATCTTAC 413
consensus_4021#1      CGTGAGTTTGTAGTGAAGATTGAAAGCATACTGACCGTACCGAAACCGGTTTCGGGCTGC 360
                      ***      ** * * *        *  * *  *  ** * *   **   ***    * *

consensus_4021#0      GCCGTTTACTACTACGCTTACACTGCCCGGCAAGTGATACAGGCTGGTGTGAGAGTCGAA 473
consensus_4021#1      ATTGTGCGGGACCGGAACTGT-TGGCATTGAAAACGAT-CATCCTTGTCCGTGGAATGCG 418
                         **     **      *     **   * **  *** **  ** **  * *    *  

consensus_4021#0      ACCC---AATAGGTATTATGATACATAGCGTGTGCGTTGCATAGCTAGTGTAAGAAGAAA 530
consensus_4021#1      TCCGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAG-AGGACCCGCGT--GGAGGCG 475
                       **    *** ** *  ** **    *****  **   * *   *  * **  * **   

consensus_4021#0      AGGTAGACAATTTTATTAGCTGTTAAGGTATGCGACCGAGTGATATGAAGCAAACACCAC 590
consensus_4021#1      AGG-ATGCAATCT-GTAGGGTGCAGAGG-GTGACATTGATCAGTGTGTGCAGGGTAATGC 532
                      *** *  **** *  *  * **   ***  **  *  **    * **        *   *

consensus_4021#0      CGCTACTGCTGTTGGCAGGTTTTAAGTGAATGTGAAAACGAAA-CGGTCTCCAATTGAAG 649
consensus_4021#1      -ACTA-TGCAGTT---AAGTGC--AGTGAACGCAATAGCCAAGGTTATAGCGAATTTAAA 585
                        *** *** ***   * **    ****** *  * * * **     *  * **** ** 

consensus_4021#0      TGGAACCCACCGACGAAGCTAGACGGTTTTACTAGCCCGCACGAACATG 698
consensus_4021#1      TGAAGTGTATGTAATGAATAAAATGATTTTTTTTAT------------- 621
                      ** *    *   *   *   * * * ****  *