cluster # 4041

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Anopheles gambiae
cluster # 4041 cluster # 4041 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4041#0 length = 962 sequences # 2

consensus_4041#1 length = 610 sequences # 1

consensusID : consensus_4041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 962
fasta sequence

                              [CCGCCCACGCGTCCGGCGCAAGCAGCGCCAGGCGGGCGAGCTGAAGGACGTGCCGGCCGTCTGCTCGGTCCTGTCGGCCGATGCGCCCCCGCCCTGCCCGCCCGACTGTCCACCGACACGGCTTACCCGCGAACAGCTCCAACCCCCGACGCCGTCCGTGTTTTTGGAGAACAAAAAGGACGCGTTCAGTCCGCAGCTGCAGGAGTTTTGCCTGAAGCATCCGATCGCGGTGGTGAGGCAGCTCGGTGCGGCCCTGAAGCTGGATTTGGGGCTGTTTTCGACCAAAACGCTTGTGGAGGCGAACCCGGACCACACGGTGGAGGTGCGGACGCAGGTACATCAGTCACCGGACGAGAACTGGGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCATCGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGACAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCATCTCGAACAGTGGCAGTGCGTGCGGCGGCGGCGGTGGCACGGGAGCGACCAGCGGTGGAGGAACCGGTACCGGTGGCGGTAACAGTTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTGGAAGGCGCAGCTGCAGGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACATGAAGGTGCCAGGCAGTAGGACGCCCGGTCACCAGGAGAACAACAACTTCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCGGC]

[+] EMBL BM630258             [CCGCCCACGCGTCCGGCGCAAGCAGCGCCAGGCGGGCGAGCTGAAGGACGTGCCGGCCGTCTGCTCGGTCCTGTCGGCCGATGCGCCCCCGCCCTGCCCGCCCGACTGTCCACCGACACGGCTTACCCGCGAACAGCTCCAACCCCCGACGCCGTCCGTGTTTTTGGAGAACAAAAAGGACGCGTTCAGTCCGCAGCTGCAGGAGTTTTGCCTGAAGCATCCGATCGCGGTGGTGAGGCAGCTCGGTGCGGCCCTGAAGCTGGATTTGGGGCTGTTTTCGACCAAAACGCTTGTGGAGGCGAACCCGGACCACACGGTGGAGGTGCGGACGCAGGTACATCAGTCACCGGACGAGAACTGGGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCATCGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGACAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCATC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM575383             [                                                                                                                                                                                                                                                                                                                                                          CCGGACGAGAACTGGGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCATCGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGACAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCATCTCGAACAGTGGCAGTGCGTGCGGCGGCGGCGGTGGCACGGGAGCGACCAGCGGTGGAGGAACCGGTACCGGTGGCGGTAACAGTTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTGGAAGGCGCAGCTGCAGGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACATGAAGGTGCCAGGCAGTAGGACGCCCGGTCACCAGGAGAACAACAACTTCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCGGC]




>consensus_4041#0
CCGCCCACGCGTCCGGCGCAAGCAGCGCCAGGCGGGCGAGCTGAAGGACGTGCCGGCCGT
CTGCTCGGTCCTGTCGGCCGATGCGCCCCCGCCCTGCCCGCCCGACTGTCCACCGACACG
GCTTACCCGCGAACAGCTCCAACCCCCGACGCCGTCCGTGTTTTTGGAGAACAAAAAGGA
CGCGTTCAGTCCGCAGCTGCAGGAGTTTTGCCTGAAGCATCCGATCGCGGTGGTGAGGCA
GCTCGGTGCGGCCCTGAAGCTGGATTTGGGGCTGTTTTCGACCAAAACGCTTGTGGAGGC
GAACCCGGACCACACGGTGGAGGTGCGGACGCAGGTACATCAGTCACCGGACGAGAACTG
GGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCAT
CGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGA
CAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCAT
CTCGAACAGTGGCAGTGCGTGCGGCGGCGGCGGTGGCACGGGAGCGACCAGCGGTGGAGG
AACCGGTACCGGTGGCGGTAACAGTTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAA
AAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTG
GAAGGCGCAGCTGCAGGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGC
CAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACAT
GAAGGTGCCAGGCAGTAGGACGCCCGGTCACCAGGAGAACAACAACTTCTGCTCGATCAA
CATCAATATTGGGCCGGGCGATTGGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCG
GC

consensusID : consensus_4041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCGTGCGGCGGCGGTGGTGGTACGGGAGCGACCAGTGGTGGTGGAACCGGTACCGGTGGCGGTAACAGCTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTGGAAGGCGCAGCTGCAAGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACATGAAGGTGCCGGGCAGTAGGACGCCCGGTCACCAGGAGAACAATAACTTCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCGGCATCCAGGCGCTGTGCGAGAAGAATAACATCAACTATCTGCACGGGTCGTGGTGGCCGGCGCTCGAGGATCTGTACGCGGAGAACATACCGGTGTACCGGTTCACGCAACGGCCGGGCGATCTGGTGTGGGTTAATGCGGGATGTGTCCACTGGGTGCAGGCCATCGGCTGGTGTAA]

[+] EMBL BM596844             [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCGTGCGGCGGCGGTGGTGGTACGGGAGCGACCAGTGGTGGTGGAACCGGTACCGGTGGCGGTAACAGCTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTGGAAGGCGCAGCTGCAAGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACATGAAGGTGCCGGGCAGTAGGACGCCCGGTCACCAGGAGAACAATAACTTCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCGGCATCCAGGCGCTGTGCGAGAAGAATAACATCAACTATCTGCACGGGTCGTGGTGGCCGGCGCTCGAGGATCTGTACGCGGAGAACATACCGGTGTACCGGTTCACGCAACGGCCGGGCGATCTGGTGTGGGTTAATGCGGGATGTGTCCACTGGGTGCAGGCCATCGGCTGGTGTAA]




>consensus_4041#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTGCGTGCGGCGGCGGTGGTGGTACGGGAGCGA
CCAGTGGTGGTGGAACCGGTACCGGTGGCGGTAACAGCTCCGCTGCCGGCAACGGCAAAC
GGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCG
ATGAGCGCAAGTGGAAGGCGCAGCTGCAAGAGCTACAGAAGCTGCCACCGTTTGCGCGCG
TCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGG
TGCAGCTGTACATGAAGGTGCCGGGCAGTAGGACGCCCGGTCACCAGGAGAACAATAACT
TCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGTGAGTGGTTTGCGACGCCCGACT
CGTACTGGGGCGGCATCCAGGCGCTGTGCGAGAAGAATAACATCAACTATCTGCACGGGT
CGTGGTGGCCGGCGCTCGAGGATCTGTACGCGGAGAACATACCGGTGTACCGGTTCACGC
AACGGCCGGGCGATCTGGTGTGGGTTAATGCGGGATGTGTCCACTGGGTGCAGGCCATCG
GCTGGTGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4041#0      CCGCCCACGCGTCCGGCGCAAGCAGCGCCAGGCGGGCGAGCTGAAGGACGTGCCGGCCGT 60
consensus_4041#1      ------------------------------------------------------------
                                                                                  

consensus_4041#0      CTGCTCGGTCCTGTCGGCCGATGCGCCCCCGCCCTGCCCGCCCGACTGTCCACCGACACG 120
consensus_4041#1      ------------------------------------------------------------
                                                                                  

consensus_4041#0      GCTTACCCGCGAACAGCTCCAACCCCCGACGCCGTCCGTGTTTTTGGAGAACAAAAAGGA 180
consensus_4041#1      ------------------------------------------------------------
                                                                                  

consensus_4041#0      CGCGTTCAGTCCGCAGCTGCAGGAGTTTTGCCTGAAGCATCCGATCGCGGTGGTGAGGCA 240
consensus_4041#1      ------------------------------------------------------------
                                                                                  

consensus_4041#0      GCTCGGTGCGGCCCTGAAGCTGGATTTGGGGCTGTTTTCGACCAAAACGCTTGTGGAGGC 300
consensus_4041#1      ------------------------------------------------------------
                                                                                  

consensus_4041#0      GAACCCGGACCACACGGTGGAGGTGCGGACGCAGGTACATCAGTCACCGGACGAGAACTG 360
consensus_4041#1      ------------------------------------------------------------
                                                                                  

consensus_4041#0      GGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCAT 420
consensus_4041#1      ------------------------------------------------------------
                                                                                  

consensus_4041#0      CGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGA 480
consensus_4041#1      ------------------------------------------------------------
                                                                                  

consensus_4041#0      CAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCAT 540
consensus_4041#1      --------------------------------------------CCGCCCACGCGTCCGC 16
                                                                   * *  * *  ***  

consensus_4041#0      CTCGAACAGTGGCAGTGCGTGCGGCGGCGGCGGTGGCACGGGAGCGACCAGCGGTGGAGG 600
consensus_4041#1      CC---ACGCGTCCGGTGCGTGCGGCGGCGGTGGTGGTACGGGAGCGACCAGTGGTGGTGG 73
                      *    **     * **************** ***** ************** ***** **

consensus_4041#0      AACCGGTACCGGTGGCGGTAACAGTTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAA 660
consensus_4041#1      AACCGGTACCGGTGGCGGTAACAGCTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAA 133
                      ************************ ***********************************

consensus_4041#0      AAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTG 720
consensus_4041#1      AAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTG 193
                      ************************************************************

consensus_4041#0      GAAGGCGCAGCTGCAGGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGC 780
consensus_4041#1      GAAGGCGCAGCTGCAAGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGC 253
                      *************** ********************************************

consensus_4041#0      CAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACAT 840
consensus_4041#1      CAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACAT 313
                      ************************************************************

consensus_4041#0      GAAGGTGCCAGGCAGTAGGACGCCCGGTCACCAGGAGAACAACAACTTCTGCTCGATCAA 900
consensus_4041#1      GAAGGTGCCGGGCAGTAGGACGCCCGGTCACCAGGAGAACAATAACTTCTGCTCGATCAA 373
                      ********* ******************************** *****************

consensus_4041#0      CATCAATATTGGGCCGGGCGATTGGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCG 960
consensus_4041#1      CATCAATATTGGGCCGGGCGATTG-TGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCG 432
                      ************************ ***********************************

consensus_4041#0      GC---------------------------------------------------------- 962
consensus_4041#1      GCATCCAGGCGCTGTGCGAGAAGAATAACATCAACTATCTGCACGGGTCGTGGTGGCCGG 492
                      **                                                          

consensus_4041#0      ------------------------------------------------------------
consensus_4041#1      CGCTCGAGGATCTGTACGCGGAGAACATACCGGTGTACCGGTTCACGCAACGGCCGGGCG 552
                                                                                  

consensus_4041#0      ----------------------------------------------------------
consensus_4041#1      ATCTGGTGTGGGTTAATGCGGGATGTGTCCACTGGGTGCAGGCCATCGGCTGGTGTAA 610