These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence [CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGTGGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCCAAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGCGGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACGTTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACG-GTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTCGGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCGTTTATTGTTGCGTTGCTTTTTTTAAGGC] [+] EMBL BM581965 [CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGTGGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCCAAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGCGGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACGTTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACG GTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTG ] [+] EMBL BM580082 [ ccgccCACGCGT CCGGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGAATGCTCGGTAAGCTACCGGGGCAACCAGGCGGC GGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTCGGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCGTTTATTGTTGCGTTGCTTTTTTTAAGGC] consensusID : consensus_4047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [CCGCCCACGCGTCCGATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTC] [+] EMBL BM593257 [CCGCCCACGCGTCCGATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4047#0 CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGT 60 consensus_4047#1 ------------------------------------------------------------ consensus_4047#0 GGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCC 120 consensus_4047#1 ------------------------------------------------------------ consensus_4047#0 AAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGC 180 consensus_4047#1 ------------------------------------------------------------ consensus_4047#0 GGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACG 240 consensus_4047#1 ------------------------------------------------------------ consensus_4047#0 TTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAA 300 consensus_4047#1 -------------------------------------------CCGCCCACGCGT-CCGA 16 * * *** ** * consensus_4047#0 TCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGT 360 consensus_4047#1 TCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGT 76 ************************************************************ consensus_4047#0 ATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCG 420 consensus_4047#1 ATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCG 136 ************************************************************ consensus_4047#0 GTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGT 480 consensus_4047#1 GTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGT 196 ************************************************************ consensus_4047#0 CAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCT 540 consensus_4047#1 CAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCT 256 ************************************************************ consensus_4047#0 GGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGG 600 consensus_4047#1 GGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGG 316 ************************************************************ consensus_4047#0 CAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACC 660 consensus_4047#1 CAACCAGGCGGCGG-CGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACC 375 ************** ********************************************* consensus_4047#0 GTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAA 720 consensus_4047#1 GTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAA 435 ************************************************************ consensus_4047#0 ATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTA 780 consensus_4047#1 ATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTA 495 ********************** ********* ******* ******************* consensus_4047#0 TGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTC 840 consensus_4047#1 TGCCACCGTGGCACACTGGACTC------------------------------------- 518 *********************** consensus_4047#0 GGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCG 900 consensus_4047#1 ------------------------------------------------------------ consensus_4047#0 TTTATTGTTGCGTTGCTTTTTTTAAGGC 928 consensus_4047#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||