These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCGACGAGGGTGACCAGCCGCAAATACTAAGTGCTGCGCTGCGGTCGAGCGTCCTAGTACCGAGACCGGGAGAGACAGACAGCGAGAGAGAGAGAGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTGCGCTTAGTAGCAGCCCGATAGTGTCTGAGTGTGATCCTGCCTTCTGCTAACGTGCGAGTCTGCCAGATCGACGTGCTCTACCAAGTGGACCGCGCGTTTGGGCACACAACAGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCCACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAACCCCG] [+] EMBL BM655840 [CCGACGAGGGTGACCAGCCGCAAATACTAAGTGCTGCGCTGCGGTCGAGCGTCCTAGTACCGAGACCGGGAGAGACAGACAGCGAGAGAGAGAGAGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTGCGCTTAGTAGCAGCCCGATAGTGTCTGAGTGTGATCCTGCCTTCTGCTAACGTGCGAGTCTGCCAGATCGACGTGCTCTACCAAGTGGACCGCGCGTTTGGGCACACAACAGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCCACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAACCCCG] consensusID : consensus_4050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCGCCCACGCGTCCGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTGCACGGCGTGCGACGA] [+] EMBL BM577806 [CCGCCCACGCGTCCGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTGCACGGCGTGCGACGA] consensusID : consensus_4050#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCGCCGGACGGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTAGCACGGCGTGCGACGAG] [+] EMBL BM600285 [CCGCCGGACGGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTAGCACGGCGTGCGACGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4050#1 ------------------------------------------------------------ consensus_4050#2 ------------------------------------------------------------ consensus_4050#0 CCGACGAGGGTGACCAGCCGCAAATACTAAGTGCTGCGCTGCGGTCGAGCGTCCTAGTAC 60 consensus_4050#1 ------------------------------------------------------------ consensus_4050#2 ------------------------------------------------------------ consensus_4050#0 CGAGACCGGGAGAGACAGACAGCGAGAGAGAGAGAGAGCGAGCGAGCGAGCGAGCGAGCG 120 consensus_4050#1 --------------------CCGCCCACGCGTCCGTACGGAGCGGGCTTTTGCAAAT--- 37 consensus_4050#2 ------------------------CCGCCGGACGGTACGGAGCGGGCTTTTGCAAAT--- 33 consensus_4050#0 TGTGTGCGCTTAGTAGCAGCCCGATAGTGTCTGAGTGTGATCCTGCCTTCTGCTAACGTG 180 ** * * * *** *** ** consensus_4050#1 CAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAG 97 consensus_4050#2 CAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAG 93 consensus_4050#0 CGAGTCTGCCAGATCG-ACGTGCTCTAC-CAAGTGGACCGCGCGTTTGGGCACACAACAG 238 * * ** * * ** * * *** * * * ***** * * * ** consensus_4050#1 GGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGT 157 consensus_4050#2 GGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGT 153 consensus_4050#0 G-CCCCAAGTGGACAGGTTTCTTCCTTTTTTT-AGGACGGAAAATAGACACCGTTTGTGT 296 * ****************************** *************************** consensus_4050#1 GTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTG 217 consensus_4050#2 GTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTG 213 consensus_4050#0 GTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTG 356 ************************************************************ consensus_4050#1 GCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCG 277 consensus_4050#2 GCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCG 273 consensus_4050#0 GCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCCACGGCCAACCG 416 ************************************************ *********** consensus_4050#1 GGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCG 337 consensus_4050#2 GGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCG 333 consensus_4050#0 GGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCG 476 ************************************************************ consensus_4050#1 CAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGT 397 consensus_4050#2 CAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGT 393 consensus_4050#0 CAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGT 536 ************************************************************ consensus_4050#1 GTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGA 457 consensus_4050#2 GTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGA 453 consensus_4050#0 GTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGA 596 ************************************************************ consensus_4050#1 AATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAA 517 consensus_4050#2 AATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAA 513 consensus_4050#0 AATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAA 656 ************************************************************ consensus_4050#1 GGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCT 577 consensus_4050#2 GGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCT 573 consensus_4050#0 GGTGGACTGCACGGAGAGTGGCAACGCGAAAACCCCG----------------------- 693 ******************************** **** consensus_4050#1 CATACACAACTGCACCT-GCACGGCGTGCGACGA- 610 consensus_4050#2 CATACACAACTGCACCTAGCACGGCGTGCGACGAG 608 consensus_4050#0 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||