cluster # 4052

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Anopheles gambiae
cluster # 4052 cluster # 4052 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4052#0 length = 727 sequences # 2

consensus_4052#1 length = 638 sequences # 1

consensusID : consensus_4052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 727
fasta sequence

                              [CCGAATGAATGTTCTTCTCCGATTGCAATAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGGGAGAAAGCAAATAACGATGGCTGATGCTGAACTAAAATACTTACTGTAAATGTGGTTTAAACGATGTGGAAGTGTGTTCCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACTCGGGGAACATTCGAAGAGAAGGTGTGAATAAAAGTTGCCCTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAGAGAGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCATTCGAAAGTTGCTAAACTCTACCAAAGCTGTCGCTGTAGAGTAGAGTTTTCGTTTAATATTTTCCTACGAGCGTAGCAAAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGTAACAGGTGGTATTGTAGGGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCTTTATTATGTACATATGCAACAGCATATGAGAGATGTAACACGAACCGCA]

[+] EMBL BM630803             [CCGAATGAATGTTCTTCTCCGATTGCAATAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGGGAGAAAGCAAATAACGATGGCTGATGCTGAACTAAAATACTTACTGTAAATGTGGTTTAAACGATGTGGAAGTGTGTTCCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACTCGGGGAACATTCGAAGAGAAGGTGTGAATAAAAGTTGCCCTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAGAGAGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCATTCGAAAGTTGCTAAACTCTACCAAAGCTGTCGCTGTAGAGTAGAGTTTTCGTTTAATATTTTCCTACGAGCGTAGCAAAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGTAACAGGTGGTATTGTAGGGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCTTTATTATGT                                        ]
[+] EMBL BM604130             [                                                                                                                                                                                                                                                                                                            ccgAAACGATCGTTCAACGTGGCGAACAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCTGTCGAAAGCTGCTAAACTCTACCATAGCTGTCGCTGTAGAGGACAGTTTTCGTTTAATATTTTCCTACGAGCGTACCAAAGCTCAGACAAAAAAAGCGTAGAAAGACGAGCAAAAGTAACA GT GTATTGTACG  GAGAGAGAGAGAGAACGACACTACAAAACCCGCTACCGAGCATACAAAACGAAATGGTCTTCAAGCAGCTGCTACAAACGATGCAACACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCTTTATTATGTACATATGCAACAGCATATGAGAGATGTAACACGAACCGCA]




>consensus_4052#0
CCGAATGAATGTTCTTCTCCGATTGCAATAGAGAGAGAGAGAGAGAGAGAGAGAGACAGA
GAGGGAGAAAGCAAATAACGATGGCTGATGCTGAACTAAAATACTTACTGTAAATGTGGT
TTAAACGATGTGGAAGTGTGTTCCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAAT
GTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACTCGGGGAACATTCGAAGAGAAGGTG
TGAATAAAAGTTGCCCTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAGAG
AGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTA
TGATTTTATTTCATTCGAAAGTTGCTAAACTCTACCAAAGCTGTCGCTGTAGAGTAGAGT
TTTCGTTTAATATTTTCCTACGAGCGTAGCAAAGCTCAGACAAAAAAAGCGTAGAAAGAC
AAGCAAAAGTAACAGGTGGTATTGTAGGGAGAGAGAGAGAGAGAACGACACTACAAAACC
AGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACC
ATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCAT
ATATATTTGCAAAACCCTTTATTATGTACATATGCAACAGCATATGAGAGATGTAACACG
AACCGCA

consensusID : consensus_4052#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence

                              [CCGGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACTTTCACATCGTTTAAACCACATTTACAGTAAGTGAAAGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACAGGGGAACATTCGAAGAGAAGGTGTGAAGAAAAGCTGTTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCACGAGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCGTTCGAAAGTTGGTAAACTCTACCAAAGCTAAAGTAGAGTTTTCGTTTAATATTTTCCTACGAGCGTAGCATAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGTAACAGTGTATTGTAGGGAGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCCTTTATTATGTACATATGCAACAGTAGAAGA]

[+] EMBL BM575390             [CCGGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACTTTCACATCGTTTAAACCACATTTACAGTAAGTGAAAGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACAGGGGAACATTCGAAGAGAAGGTGTGAAGAAAAGCTGTTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCACGAGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCGTTCGAAAGTTGGTAAACTCTACCAAAGCTAAAGTAGAGTTTTCGTTTAATATTTTCCTACGAGCGTAGCATAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGTAACAGTGTATTGTAGGGAGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCCTTTATTATGTACATATGCAACAGTAGAAGA]




>consensus_4052#1
CCGGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACTTTCACATCGTTTAAACCAC
ATTTACAGTAAGTGAAAGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACGCGCAA
ATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACAGGGGAACATTCGAAGAGAAGGT
GTGAAGAAAAGCTGTTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCACGAG
CAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATG
ATTTTATTTCGTTCGAAAGTTGGTAAACTCTACCAAAGCTAAAGTAGAGTTTTCGTTTAA
TATTTTCCTACGAGCGTAGCATAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGT
AACAGTGTATTGTAGGGAGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAG
CATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGA
ATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGC
AAAACCCCTTTATTATGTACATATGCAACAGTAGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4052#0      CCGAATGAATGTTCTTCTCCGATTGCAATAGAGAGAGAGAGAGAGAGAGAGAGAGACAGA 60
consensus_4052#1      --------------------------------------------------------CCGG 4
                                                                              * * 

consensus_4052#0      GAGGGAGAAAGCAAATAACGATGGCTGATGCTGAACTAAAATACTTACTGTAAATGTGGT 120
consensus_4052#1      TGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACTTT--CACATCGTTTAAACCACAT 62
                         *  *  *  *   ** *  *    **     ***     ** *  * ****     *

consensus_4052#0      TTAAACGATGTGGAAGTGTGTTCCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAAT 180
consensus_4052#1      TTACAGTAAGTGAAAGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAAT 122
                      *** *  * *** ********* *************************************

consensus_4052#0      GTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACTCGGGGAACATTCGAAGAGAAGGTG 240
consensus_4052#1      GTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACA-GGGGAACATTCGAAGAGAAGGTG 181
                      ***********************************  ***********************

consensus_4052#0      TGAATAAAAGTTGCCCTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAGAG 300
consensus_4052#1      TGAAGAAAAGCTGT--TCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAC-G 238
                      **** ***** **   *****************************************  *

consensus_4052#0      AGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTA 360
consensus_4052#1      AGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTA 298
                      ************************************************************

consensus_4052#0      TGATTTTATTTCATTCGAAAGTTGCTAAACTCTACCAAAGCTGTCGCTGTAGAGTAGAGT 420
consensus_4052#1      TGATTTTATTTCGTTCGAAAGTTGGTAAACTCTACCAAAGCT--------AAAGTAGAGT 350
                      ************ *********** *****************        * ********

consensus_4052#0      TTTCGTTTAATATTTTCCTACGAGCGTAGCAAAGCTCAGACAAAAAAAGCGTAGAAAGAC 480
consensus_4052#1      TTTCGTTTAATATTTTCCTACGAGCGTAGCATAGCTCAGACAAAAAAAGCGTAGAAAGAC 410
                      ******************************* ****************************

consensus_4052#0      AAGCAAAAGTAACAGGTGGTATTGTAGGGAGAGAGAGAGAGAGA--ACGACACTACAAAA 538
consensus_4052#1      AAGCAAAAGTAACAGT--GTATTGTAGGGAGAGAGAGAGAGAGAGAACGACACTACAAAA 468
                      ***************   **************************  **************

consensus_4052#0      CCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAA 598
consensus_4052#1      CCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAA 528
                      ************************************************************

consensus_4052#0      CCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCC 658
consensus_4052#1      CCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCC 588
                      ************************************************************

consensus_4052#0      ATATATATTTGCAAAACCC-TTTATTATGTACATATGCAACAGCATATGAGAGATGTAAC 717
consensus_4052#1      ATATATATTTGCAAAACCCCTTTATTATGTACATATGCAACAGTAGAAGA---------- 638
                      ******************* *********************** * * **          

consensus_4052#0      ACGAACCGCA 727
consensus_4052#1      ----------