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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1032 fasta sequence
[CCGGTCCACCGACAGTAGTGGTGCAGCGCGATCCTTTCCCCGTCATTCCGGGCAGATTCCCTGGCGCTGTTCCTGGCGGACGGCCGGCGATGGGATTCCCTCCCCAGCAACCGGTTGGTGGTGGAGTGGGTTTTCCCTCTAATGTACCGTTTCCCGGCTTTCCCGGCGGCCAGTTTCCGGTGCAACCGTTCCCGATGTTTGGTGCACCGGCACCGGGTACAAACTTTGGACTGGCAGCAGTACCGCAGAACCCGCAGATACCGCCGTACTTCTTCGGTAATGGACAGTTCCGACGGCCTTAAACTTGGTCAAAAGTTTGTGGGGAACTGGGTGGGAACGAAACTTGTAGCACGTAAGAGAAATGCTCATTTATTTATTGATCTAAATTATTTTAACTCAAGCGAGACAGGTTTAGTAAGTGGCCGTTTCTTGGCAGACGCGTGGTTATTGTGTAAGGATAGTGGACTAGCACACCAGGGATTAAAGGAACCGTGCAGGGCTGGGGCGACGCGGTCGGGTTTTCAACCAATACCAAAGAAGTTCCCCCAATCAGCGTCGTACCTAGCGGCGTGAAATGCCGGGCAGCGTGAAAAACTTTGGAAAGAACTCAGACGAGGACTGCGGCAGCCACGGAGCAAAACAAGCCACACCAATACACGACCGGATGGTTGGAAAATCAGGCGAAGAATGGGTGATTTTATTCTTCATTGGAAAATAATTTATTTACAACAGTTTTCGGACATTCTTTCGTGCTTCCGTGTGGCTTAAAACTTTCCCATCAACGGAAATCTTCCTCCCTTTTCTCCTCTTCGATTGGTTCAAAATCATTGGAGATGCATGTGTGTAGTGGGCAAAAACTTCGTTTGCAGGGAACCTGGCCCCTGGGAACTTTCGCCCCGATCGGCCAAAGTAACTTTGCTACAAATCCTTTTCCCTTTTATTCGTAAAGTATCGAAGTTCGGTTGGGATAGTTTGTGTGTTTGGGTTCGACTGCTGCAGCAAATAGAAGCATTTAGCAAATGGATGTAAAGG]
[+] EMBL BM656502 [CCGGTCCACCGACAGTAGTGGTGCAGCGCGATCCTTTCCCCGTCATTCCGGGCAGATTCCCTGGCGCTGTTCCTGGCGGACGGCCGGCGATGGGATTCCCTCCCCAGCAACCGGTTGGTGGTGGAGTGGGTTTTCCCTCTAATGTACCGTTTCCCGGCTTTCCCGGCGGCCAGTTTCCGGTGCAACCGTTCCCGATGTTTGGTGCACCGGCACCGGGTACAAACTTTGGACTGGCAGCAGTACCGCAGAACCCGCAGATACCGCCGTACTTCTTCGGTAATGGACAGTTCCGACGGCCTTAAACTTGGTCAAAAGTTTGTGGGGAACTGGGTGGGAACGAAACTTGTAGCACGTAAGAGAAATGCTCATTTATTTATTGATCTAAATTATTTTAACTCAAGCGAGACAGGTTTAGTAAGTGGCCGTTTCTTGGCAGACGCGTGGTTATTGTGTAAGGATAGTGGACTAGCACACCAGGGATTAAAGGAACCGTGCAGGGCTGGGGCGACGCGGTCGGGTTTTCAACCAATACCAAAGAAGTTCCCCCAATCAGCGTC ]
[+] EMBL BX615578 [ ACGTAAGAGAAATGCTCATTTATTTATTGATCTAAATTATTGTAACTCAAGCGAGAAAGGTTTAGTAAGTGGCCGTTTCTTGGCAGACGCGTGGTTATTGTGTAAGGATAGTGGACT G A GGGGATTGACGGCACCGTGCAGGGCTGGGTCGACGCGGTCGGGTTTTCAACCAATACCAAAGAAGTTCCCCCAATCAGCGTCGTACCTAGCGGCGTGAAATGCCGGGCAGCGTGAAAAACTTTGGAAAGAACTCAGACGAGGACTGCGGCAGCCACGGAGCAAAACAAGCCACACCAATACACGACCGGATGGTTGGAAAATCAGGCGAAGAATGGGTGATTTTATTCTTCATTGGAAAATAATTTATTTACAACAGTTTTCGGACATTCTTTCGTGCTTCCGTGTGGCTTAAAACTTTCCCATCAACGGAAATCTTCCTCCCTTTTCTCCTCTTCGATTGGTTCAAAATCATTGGAGATGCATGTGTGTAGTGGGCAAAAACTTCGTTTGCAGGGAACCTGGCCCCTGGGAACTTTCGCCCCGATCGGCCAAAGTAACTTTGCTACAAATCCTTTTCCCTTTTATTCGTAAAGTATCGAAGTTCGGTTGGGATAGTTTGTGTGTTTGGGTTCGACTGCTGCAGCAAATAGAAGCATTTAGCAAATGGATGTAAAGG]
consensusID : consensus_4063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence
[AAATCTTCCTCCCTTTTCTCCCCTTTGATTGGTTCAAAATCATTGGAGATGCATGTGTGTAGTGGGCAAAAACTTCGTTTGCAGGGAACCTGGCCCCTGGGAACTTTCGCCCCGATCGGCCAAAGTAACTTTGCTACAAATCCTTTTCCCTTTTATTCGTAAAGTATCGAAGTTCGGTTGGGATAGTTTGTGTGTTTGGGTTCGACTCTTCCGTTTGCCTGTTTCCGCATTATTGGAAAGATTAGTGAAGGCTAGAGAGAGCAAAGTTGGAGGATGAGCGGGAAAAGTGAATAAAGCGAAAACGGGATGGTCTATTAGTGGAAGTGGGTAGTGCAAGTTTGCGCCTTGAAGAAACTCTCACTCGCATGAAACTGAGCTGTGGATGGGGGAGGAAGGAAATTTTAAACATAATATTTTAAGAAGTGGCTTTAAGTTGTCTTCTTGCAATGTAAAGCAAGGCTGAGAAGCTGAAGCTGTATATTAATTTTGTAAATTGCAAGAAGGCAAATGTTTTTCGAGCTACAAACAAACACGAAACTCATGGATGCGCCTGCGGATAGGAATGGGAAGCCGAACCCCTCAATGGAAGGTGTGCCTTTGTGGAGCCCAAGGTAGACTAATTAATTTGTGCATTGTGTCTGACAAATGGTGCTAAATTTGGGAATGGAAGTACGGTACTGCGCTGCTGCACCTTGCCAGAAAAAAGGGAACAAAGGTGCGAACTGGTGAGAGGTTTTCGCGTTCGACTGCTGCAGCAAATAGAAGCATTTAGCAAATGGATGTAAAGGCAAAGGCAAACAATTCAAATAAATCTAGTCTTCCCTGACAGATCCGC]
[+] EMBL BX613547 [AAATCTTCCTCCCTTTTCTCCCCTTTGATTGGTTCAAAATCATTGGAGATGCATGTGTGTAGTGGGCAAAAACTTCGTTTGCAGGGAACCTGGCCCCTGGGAACTTTCGCCCCGATCGGCCAAAGTAACTTTGCTACAAATCCTTTTCCCTTTTATTCGTAAAGTATCGAAGTTCGGTTGGGATAGTTTGTGTGTTTGGGTTCGACTCTTCCGTTTGCCTGTTTCCGCATTATTGGAAAGATTAGTGAAGGCTAGAGAGAGCAAAGTTGGAGGATGAGCGGGAAAAGTGAATAAAGCGAAAACGGGATGGTCTATTAGTGGAAGTGGGTAGTGCAAGTTTGCGCCTTGAAGAAACTCTCACTCGCATGAAACTGAGCTGTGGATGGGGGAGGAAGGAAATTTTAAACATAATATTTTAAGAAGTGGCTTTAAGTTGTCTTCTTGCAATGTAAAGCAAGGCTGAGAAGCTGAAGCTGTATATTAATTTTGTAAATTGCAAGAAGGCAAATGTTTTTCGAGCTACAAACAAACACGAAACTCATGGATGCGCCTGCGGATAGGAATGGGAAGCCGAACCCCTCAATGGAAGGTGTGCCTTTGTGGAGCCCAAGGTAGACTAATTAATTTGTGCATTGTGTCTGACAAATGGTGCTAAATTTGGGAATGGAAGTACGGTACTGCGCTGCTGCACCTTGCCAGAAAAAAGGGAACAAAGGTGCGAACTGGTGAGAGGTTTTCGCGTTCGACTGCTGCAGCAAATAGAAGCATTTAGCAAATGGATGTAAAGGCAAAGGCAAACAATTCAAATAAATCTAGTCTTCCCTGACAGATCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4063#0 CCGGTCCACCGACAGTAGTGGTGCAGCGCGATCCTTTCCCCGTCATTCCGGGCAGATTCC 60
consensus_4063#1 ------------------AAATCTTCCTCCCTTTTCTCCCCTTTGATTGGTTCAAAATCA 42
* * * * * ***** * * * ** * **
consensus_4063#0 CTGGCGCTGTTCCTGGCGGACGGCCGGCGATGGGATTCCCTCCCCAGCAACCGGTTGGTG 120
consensus_4063#1 TTGGAGATGCAT---GTGTGTAGTGGGCAAAAACTTCGTTTGCAGGGAACCTGGCCCCTG 99
*** * ** * * * *** * * * * * * * ** **
consensus_4063#0 GTGGAGTGGGTTTTCCCTCTAATGTACCGTTTCCCGGCTTTCCCGGCGGCCAGTTTCCGG 180
consensus_4063#1 G------GAACTTTCGCCCCGATCGGCCAAAG--TAACTTTGCTACAAATCCTTTTCCCT 151
* * **** * * ** ** **** * * *****
consensus_4063#0 TGCAACCGTTCCCGATGTTTGGTGCACCGGCACCGGGTACAAACTTTGGACTGGCAGCAG 240
consensus_4063#1 TTTA----TTCGTAAAGTATCGAAGTTCGGTT---GGGATAGTTTGTGTGTTTG----GG 200
* * *** * ** * * *** ** * * * ** * * *
consensus_4063#0 TACCGCAGAACCCGCAGATACCGCCGTACTTCTTCGGTAATGGACAGTTCCGACGGCCTT 300
consensus_4063#1 TTC----GACTCTTCCGTT--TGCC-TGTTTCCGCATTATTGGAAAGATTAG------TG 247
* * ** * * * * *** * *** * ** **** ** * * *
consensus_4063#0 AAACTTGGTCAAAAGTTTGTGGGGAACTGGGTGGGAACGAAACTTGTAGCACGTAAGAGA 360
consensus_4063#1 AAGGCTAGAGAGAGCAAAGTTGGAGGATGAGCGGGAA--AAGTGAATAAAGCGAAAACGG 305
** * * * * ** ** ** * ***** ** ** ** ** *
consensus_4063#0 AATGCTCATTTATTTATTGATCTAAATTATTTTAACTCAAGCGAGACAGGTTTAGTAAGT 420
consensus_4063#1 GATG---GTCTATTAGTGGAAGTGGGTAGTGCAAGTTTGCGCC-------TTGAAGAAAC 355
*** * **** * ** * * * * * ** ** * **
consensus_4063#0 GGCCGTTTCTTGGCAGACGCGTGGTTATTGTGTAAGGATAGTGGACTAGCACACCAGGGA 480
consensus_4063#1 TCTCACTCGCATGAAACTGAGCTGTGGATGGGGGAGGAAGGAAATTTTAAACAT-AATAT 414
* * * * * * ** ** * **** * * *** *
consensus_4063#0 TTAAAGGAACCGTGCAGGGCTGGGGCGACGCGGTCGGGTTTTCAACCAATACCAAAGAAG 540
consensus_4063#1 TTTAAGAAGTGGCTTTAAGTTG----------------TCTTCTTGCAATGTAAAGCAAG 458
** *** * * * ** * *** **** ** ***
consensus_4063#0 TTCCCCCAATCAGCGTCGTAC-CTAGCGGCGTGAAATGCCGGGCAGCGTGAAAAACTTTG 599
consensus_4063#1 GCTGAGAAGCTGAAGCTGTATATTAATTTTGTAAATTGCAAGAAGGC---AAATGTTTT- 514
* * *** ** ** ** *** * ** *** ***
consensus_4063#0 GAAAGAACTCAGACGAGGACTGCGGCAGCCACGGAGCAAAACAAGCCACACCAATACACG 659
consensus_4063#1 --------TCGAGCTACAA-----ACAAACACGAAACTCATGGATGCGCCTGCGGATAGG 561
** * * * ** **** * * * * * * * * *
consensus_4063#0 ACCGGATGGTTGGAAAATCAGGCGAAGAATGGGTGATTTTATTCTTCATTGGAAAATAAT 719
consensus_4063#1 AATGGGAAGCCGAACCCCTCAATGGAAGGTGTGCCTTTGTGGAGCCCAAGGTAGACTAAT 621
* ** * * * * * ** * ** * ** * * * ****
consensus_4063#0 TTATTTACAACAGTTTTCGGACATTCTTTCGTGCTTCCGTGTGGCTTAAAACTTTCCCAT 779
consensus_4063#1 TAATTTGTG------------CATTGTGTC----TGACAAATGGTGCTAAATTTGGGAAT 665
* **** **** * ** * * *** *** ** **
consensus_4063#0 CAACGGAAATCTTCCTCCCTTTTCTCCTCTTCGATTGGTTCAAAATCATTGGAGATGCAT 839
consensus_4063#1 GGAAGTACGGTACTGCGCTGCTGCACCTTGCCAGAAAAAAGGGAACAAAGGTGCGAACTG 725
* * * * * * *** * ** * * *
consensus_4063#0 GTGTGTAGTGGGCAAAAACTTCGTTTGCAGGGAACCTGGCCCCTGGGAACTTTCGCCCCG 899
consensus_4063#1 GTGAGAGGTTTTCGCGTTCGACTGCTGCAGCAAATAGAAGCATTTAGCAAATGGATGTAA 785
*** * ** * * * ***** ** * * * * *
consensus_4063#0 ATCGGCCAAAGTAACTTTGCTACAAATCCTTTTCCCTTTTATTCGTAAAGTATCGAAGTT 959
consensus_4063#1 A--GGCAAAGGCAAAC--AATTCAAATAAATCTAGTCTTCCCTGACAGATCCGC------ 835
* *** ** * ** * ***** * * ** * * * *
consensus_4063#0 CGGTTGGGATAGTTTGTGTGTTTGGGTTCGACTGCTGCAGCAAATAGAAGCATTTAGCAA 1019
consensus_4063#1 ------------------------------------------------------------
consensus_4063#0 ATGGATGTAAAGG 1032
consensus_4063#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||