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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence
[GGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCTGCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAGTCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACCAACACACATTACCGGTCGCACCGATCGATGGGAACGAATGTTGCTGGATCACTTTTCAGCACCACCACTAAAGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAAAATAATCATGTTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGATTTTCAATACACACCGGCAGATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACTGATGGCAGCATTTGGGACAATCTATCGTTAGCGATCTGGGAAAAGTTCACTGCTGCCCAGCAGTCGGAGGAGAAATATCTTGAAAAGATGCAACTATGGCGCGATCTGTATATCTCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGCTTCGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCGCGGAGCGCTCCCAGCTGCTACGATCCTCGCTTGGAAGCGTTGCTCAATTTGTCACTGGTGAAGGAATATTTCATGAGTATGCCATCGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGCTTTCAAGACAGCAAGCACGGCATTGANGNGGATCTGAATTTCAACAATTGCGTTGGGATTANGA]
[+] EMBL BX625769 [GGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCTGCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAGTCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACCAACACACATTACCGGTCGCACCGATCGATGGGAACGAATGTTGCTGGATCACTTTTCAGCACCACCACTAAAGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAAAATAATCATGTTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGATTTTCAATACACACCGGCAGATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACTGATGGCAGCATTTGGGACAATCTATCGTTAGCGATCTGGGAAAAGTTCACTGCTGCCCAGCAGTCGGAGGAGAAATATCTTGAAAAGATGCAACTATGGCGCGATCTGTATATCTCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGCTTCGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCGCGGAGCGCTCCCAGCTGCTACGATCCTCGCTTGGAAGCGTTGCTCAATTTGTCACTGGTGAAGGAATATTTCATGAGTATGCCATCGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGCTTTCAAGACAGCAAGCACGGCATTGANGNGGATCTGAATTTCAACAATTGCGTTGGGATTANGA]
consensusID : consensus_4070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[GGCCAAGAATCGCCACGAGGTNGAGAACTGTTACGGGCACCAGTCTGTGCCGGTGTTTGGAGAACTGTTCGGTAACGCTAGCCATAGCCATCCGAACCCTATCCAATTCATAAATAGCCAGACGGCAGGAAGTTTTGGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCTGCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAGTCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACCAACACACATTACCGGTCGCACCGATCGATGGGAACTAATGTTGCTGGATCTCTTTTCAGCACCACCACTAAGGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAANAATAATCATGTTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGAGTTTTCAATACACACCGGCAGATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACTGATGGCAGCATTTTGGGACAAGTCTATCGTTAAGCGATCTGGGAAAAGTTCACTGCTGCCCAGCAGGTCGGAACGAGAAATATCTTGGAANCGATTGGCAACGTATGGGCGNCGGATCCTTGGNGANTANTCCTCCGGGANTCCGAGGAAACAAGGGGCTTTTCCNCCGGAAAGGTANTAAGGCCCTTTNNATCATAGGGTTCAGGNCAAGGACACGGAGANCCTTCACNCGGNGCTTTNTGGGGGTAGGCNTGAAGCCANGGTTNTCACAG]
[+] EMBL BX468244 [GGCCAAGAATCGCCACGAGGTNGAGAACTGTTACGGGCACCAGTCTGTGCCGGTGTTTGGAGAACTGTTCGGTAACGCTAGCCATAGCCATCCGAACCCTATCCAATTCATAAATAGCCAGACGGCAGGAAGTTTTGGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCTGCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAGTCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACCAACACACATTACCGGTCGCACCGATCGATGGGAACTAATGTTGCTGGATCTCTTTTCAGCACCACCACTAAGGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAANAATAATCATGTTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGAGTTTTCAATACACACCGGCAGATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACTGATGGCAGCATTTTGGGACAAGTCTATCGTTAAGCGATCTGGGAAAAGTTCACTGCTGCCCAGCAGGTCGGAACGAGAAATATCTTGGAANCGATTGGCAACGTATGGGCGNCGGATCCTTGGNGANTANTCCTCCGGGANTCCGAGGAAACAAGGGGCTTTTCCNCCGGAAAGGTANTAAGGCCCTTTNNATCATAGGGTTCAGGNCAAGGACACGGAGANCCTTCACNCGGNGCTTTNTGGGGGTAGGCNTGAAGCCANGGTTNTCACAG]
consensusID : consensus_4070#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[AGGCAAGAATCCCGACGAGTGTACAGTCGGAAGAGAAATATCTTGCAAAGATGCACTATGGCGCGATCCTGTATATCTCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGCTTTGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCAGCGGAGCGCTCCCAGCTGCTACGATACCTCGCTTGGAAGCGTTGCTCAAATTGTCACTGGTGAAGGAATATTTCATGAGTATGCCATACGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGCTTTCAAGGACAGCAAGCACGGCNATTGAGGTGGATCTGAATTTCAACAATTGCGTTGGGATTAGGAATACGCATTTGTTGCACTGTTATTCGCAGATGGACCTGGCGCGTTAGACCGTTGGGTGTTGGTGGTAAAGTTGTGGGGCTCGGGATCTACAAGCATAAACGATGCTTAAAACATGACTTATATCGCAGCTANTCTCTGGTAATTGATAGGGTATTCATTTTCCTGGCAGTAACGGAACACAANGCNCACCCAGGTTCTTTCCAATGTTTGCATGCCTTTACAATCCCTGNACAAGTTTATGAACAANTCACTCGAGCGTTTC]
[+] EMBL BX469068 [AGGCAAGAATCCCGACGAGTGTACAGTCGGAAGAGAAATATCTTGCAAAGATGCACTATGGCGCGATCCTGTATATCTCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGCTTTGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCAGCGGAGCGCTCCCAGCTGCTACGATACCTCGCTTGGAAGCGTTGCTCAAATTGTCACTGGTGAAGGAATATTTCATGAGTATGCCATACGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGCTTTCAAGGACAGCAAGCACGGCNATTGAGGTGGATCTGAATTTCAACAATTGCGTTGGGATTAGGAATACGCATTTGTTGCACTGTTATTCGCAGATGGACCTGGCGCGTTAGACCGTTGGGTGTTGGTGGTAAAGTTGTGGGGCTCGGGATCTACAAGCATAAACGATGCTTAAAACATGACTTATATCGCAGCTANTCTCTGGTAATTGATAGGGTATTCATTTTCCTGGCAGTAACGGAACACAANGCNCACCCAGGTTCTTTCCAATGTTTGCATGCCTTTACAATCCCTGNACAAGTTTATGAACAANTCACTCGAGCGTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4070#0 ------------------------------------------------------------
consensus_4070#1 GGCCAAGAATCGCCACGAGGTNGAGAACTGTTACGGGCACCAGTCTGTGCCGGTGTTTGG 60
consensus_4070#2 ------------------------------------------------------------
consensus_4070#0 ------------------------------------------------------------
consensus_4070#1 AGAACTGTTCGGTAACGCTAGCCATAGCCATCCGAACCCTATCCAATTCATAAATAGCCA 120
consensus_4070#2 -------------------------AGGCA--AGAATCC----CGACGAGTGTACAGTCG 29
consensus_4070#0 ----------------GGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCT-- 42
consensus_4070#1 GACGGCAGGAAGTTTTGGAAGTAGCTCATCTTTGGAACTGGCACTGCAAGCAGCAGCT-- 178
consensus_4070#2 GAAGAGAAATATCTTGCAAAGATGC---ACTATGGCGC-GATCCTGTATATCTCGATCAA 85
*** ** ** *** * * *** * *
consensus_4070#0 GCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAG 102
consensus_4070#1 GCCAGTTCTTCAAGTTCGTCGTCGCTGTCTGCGTCATCGGTGCCGCCCAACGATTCTCAG 238
consensus_4070#2 GAAAGGCTTTCCGAAGTATAGCCTTTATCTG-GTCGGCAGCACGATCTCTGGCTTTGGTG 144
* ** *** * * * * **** *** * * * * * ** *
consensus_4070#0 TCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACC 162
consensus_4070#1 TCGATGCAGAGCGGACATCCAAAGACACGCAGTCAATCGGGGCGAACATCACCCACCACC 298
consensus_4070#2 CTGA--CAGTTCAGATGT--GGACATGTGCCTTGTTTCAGCG-GAGCGCTCCCAGCTGCT 199
** *** * ** * * * ** * ** * * ** * ** * *
consensus_4070#0 AACACACATTACC-GGTCGCACCGATCGA-TGGGAACGAATGTTGCTGGATCACTTTTCA 220
consensus_4070#1 AACACACATTACC-GGTCGCACCGATCGA-TGGGAACTAATGTTGCTGGATCTCTTTTCA 356
consensus_4070#2 ACGATACCTCGCTTGGAAGCGTTGCTCAAATTGTCACTGGTGAAGGAATATTTCATGAGT 259
* * ** * * ** ** * ** * * * ** ** * ** * *
consensus_4070#0 GCACCACCACTAAAGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAAAA-TAATCAT--G 277
consensus_4070#1 GCACCACCACTAAGGGACAATCGTCCGCCGGTGGAAGCGTGCGCAAANAATAATCAT--G 414
consensus_4070#2 ATGCCATACGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCG 319
*** * * * * ** * * * * ** * *** ** *** * *
consensus_4070#0 TTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGA-TTTTCAATACACACCGGCA 336
consensus_4070#1 TTTCCATGAGCTATGTACATCGTTCATCATTGCCCGCCGAGTTTTCAATACACACCGGCA 474
consensus_4070#2 CTTTCAAGGACAGCAAGCA-CGGCNATTGAGGTGGATCTGAATTTCAACA-ATTGCGTTG 377
** ** * * ** ** ** * * ****** * * **
consensus_4070#0 GATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACT 396
consensus_4070#1 GATCGATTCATTCAGCGTGCGGATGATGTCGAAATGAAGTCTCCGCCGGTTGCGCTCACT 534
consensus_4070#2 GG-------ATTAGGAATACGCATT-TGTTGCACTGT--TATTCGCAGATGGACCTGGCG 427
* *** * * ** ** *** * * ** * * *** * * * ** *
consensus_4070#0 GATGGCAGCATTT-GGGACAA-TCTATCGTTA-GCGATCTGGGAAAAGTTCACTGCTGCC 453
consensus_4070#1 GATGGCAGCATTTTGGGACAAGTCTATCGTTAAGCGATCTGGGAAAAGTTCACTGCTGCC 594
consensus_4070#2 CGTTAGACCGTTGGGTGTTGGTGGTAAAGTTGTGGGGCTCGGGA----TCTACAAGCATA 483
* * * ** * * ** *** * * **** * **
consensus_4070#0 CAGCA-G-TCGGAG-GAGAAATATCTTGAAAAGATGCAACTATGGCGCGATCTGTATATC 510
consensus_4070#1 CAGCA-GGTCGGAACGAGAAATATCTTGGAANCGATTGGCAACG-TATGGGCGNCGGATC 652
consensus_4070#2 AACGATGCTTAAAACATGACTTATATCGCAGCTANTCTCTGGTA--ATTGATAGGGTATT 541
* * * * * ** *** * * * **
consensus_4070#0 TCGATCAAGAAAGGCTTTCCGAAGTATAGCCTTTATCTGGTCGGCAGCACGATCTCTGGC 570
consensus_4070#1 CT--TGGNGANTANTCCTCCGGGANTCCGAGGAAACAAGG--GGCTTTTCCNCCGGAAAG 708
consensus_4070#2 CATTTTCCTGGCAGTA--ACGGAACACAANGCNCACCCAG---GTTCTTTCC-----AAT 591
* ** * * *
consensus_4070#0 TTCGGTGCTGACAGTTCAGATGTGGACATGTGCCTTGTTTCGCGGAGCGCTCCCAGCTGC 630
consensus_4070#1 GT-ANTAAGGCCCTTTNNATCATAGGGTTCAGGNCAAGGACACGGAGANCCTTCACNCGG 767
consensus_4070#2 GT-TTGCATGCCTTTACAATC-------CCTGNACAAGTTTATGAACAAN--TCACTCGA 641
* * * * * * * ** *
consensus_4070#0 TACGATCCTCGCTTGGAAGCGTTGCTCAATTTGTCACTGGTGAAGGAATATTTCATGAGT 690
consensus_4070#1 NGCTTTNTGGGGGTAGGCNTGAAGCCANGGTTNTCACAG--------------------- 806
consensus_4070#2 GCGTTTC----------------------------------------------------- 648
*
consensus_4070#0 ATGCCATCGTCAAGCTTCAACGACTTCAGCTTGATTCAAGCGAAAGTGCCAATTCTCCGC 750
consensus_4070#1 ------------------------------------------------------------
consensus_4070#2 ------------------------------------------------------------
consensus_4070#0 TTTCAAGACAGCAAGCACGGCATTGANGNGGATCTGAATTTCAACAATTGCGTTGGGATT 810
consensus_4070#1 ------------------------------------------------------------
consensus_4070#2 ------------------------------------------------------------
consensus_4070#0 ANGA 814
consensus_4070#1 ----
consensus_4070#2 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||