These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCAACAACAACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGGCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCGAGGCCAACCGATCGTGCTGGGTGGTGATCCGAAGAGCAAGAACTTCCTCTACACCAACGGGCATTCCGTGATTATCCGCAACATCGATAATCCCGAAATTGCGGACATCTACACCGAACACTCCTGCGCGGTGAACGTGGGCAAGTACTCGCCCAGGGGGGTCTACATTGCGTTCCGGGACGCGTCTGGGAAAATTCCCATCTGGGGACACCGGGGAACCAGGAACCCTACTGGAAAATGAATTTCCCCCCCATTGGGGGGCCCAATCAAGGACATCTCCTGGTCGCCCGACAGCCAGCGGATCGTGATCGTGGGCGAGGGCCTGGGAAGCGGTTCGGGCACGTGTTTATGGCGGAAACGGGCACCTCGGTGGGCGAGATTTCGGGCCAATCGAAGCCGATTAATTCGTGCGATTTCCGGCCGGCCCGCCCGTTCCGTATCATCACTGGCAGCGAGGACAACACGAATCGGCGTGTTCGAAGGGCCGCCGTTCAAGTTCAAGATGAC] [+] EMBL BM654848 [CCGGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCAACAACAACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGGCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCGAGGCCAACCGATCGTGCTGGGTGGTGATCCGAAGAGCAAGAACTTCCTCTACACCAACGGGCATTCCGTGATTATCCGCAACATCGATAATCCCGAAATTGCGGACATCTACACCGAACACTCCTGCGCGGTGAACGTGGGCAAGTACTCGCCCAGGGGGGTCTACATTGCGTTCCGGGACGCGTCTGGGAAAATTCCCATCTGGGGACACCGGGGAACCAGGAACCCTACTGGAAAATGAATTTCCCCCCCATTGGGGGGCCCAATCAAGGACATCTCCTGGTCGCCCGACAGCCAGCGGATCGTGATCGTGGGCGAGGGCCTGGGAAGCGGTTCGGGCACGTGTTTATGGCGGAAACGGGCACCTCGGTGGGCGAGATTTCGGGCCAATCGAAGCCGATTAATTCGTGCGATTTCCGGCCGGCCCGCCCGTTCCGTATCATCACTGGCAGCGAGGACAACACGAATCGGCGTGTTCGAAGGGCCGCCGTTCAAGTTCAAGATGAC] consensusID : consensus_4078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CCGGCCAATCGAAGCCGATCAATTCGTGCGATTTCCGCCCGGCCCGCCCGTTCCGCATCGTGACCGGCAGTGAGGACAACACGATCGGCGTGTTCGAGGGACCGCCGTTCAAGTTCAAGATGACCAAGCAGGACCACACCCGGTTCGTGCAGGCGGTGCGCTACTCGCCGAGCGGCCACCTGTTCGCTTCGGCCGGGTTCGATGGCAAGGTGTTCATCTACGACGGTACCACGTCCGAGCTGGTCGGTGAGGTGGGCTCGCCGGCGCACAGTGGCGGTGTGTACGGGGTCGCCTGGAAGCCGGACGGTACGCAGCTGCTGACCTGCTCGGGCGACAAGTCCTGCCGGCTGTGGGACGTGGCGACGCGCACGCTCATCAGCGAGTTCCCGATGGGCAGCACGGTCGACGATCAGCAGGTGTCGTGTCTGTGGCAGGGCGACCACATCCTGTCCGTGTCGCTGTCCGGGTTCATCAACTACCTCGATGTGAACAATCCCACCAAACCGCTGCGCATCGTGAAGGGCCACAACAAGCCGATCACGGTGCTGACGCTGAGCGACGATCGCAGCACGATCTACA] [+] EMBL BM580212 [CCGGCCAATCGAAGCCGATCAATTCGTGCGATTTCCGCCCGGCCCGCCCGTTCCGCATCGTGACCGGCAGTGAGGACAACACGATCGGCGTGTTCGAGGGACCGCCGTTCAAGTTCAAGATGACCAAGCAGGACCACACCCGGTTCGTGCAGGCGGTGCGCTACTCGCCGAGCGGCCACCTGTTCGCTTCGGCCGGGTTCGATGGCAAGGTGTTCATCTACGACGGTACCACGTCCGAGCTGGTCGGTGAGGTGGGCTCGCCGGCGCACAGTGGCGGTGTGTACGGGGTCGCCTGGAAGCCGGACGGTACGCAGCTGCTGACCTGCTCGGGCGACAAGTCCTGCCGGCTGTGGGACGTGGCGACGCGCACGCTCATCAGCGAGTTCCCGATGGGCAGCACGGTCGACGATCAGCAGGTGTCGTGTCTGTGGCAGGGCGACCACATCCTGTCCGTGTCGCTGTCCGGGTTCATCAACTACCTCGATGTGAACAATCCCACCAAACCGCTGCGCATCGTGAAGGGCCACAACAAGCCGATCACGGTGCTGACGCTGAGCGACGATCGCAGCACGATCTACA] consensusID : consensus_4078#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [CCGCGGACGCGTGGGGCCGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCCCAACAACAACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGGCCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCCGAGGCCAACCGATCGTGCTGGGCGGTGATCCGAAGGGCAAGAACTTCCTCTACACCAACGGCCATTCGGTGATTATCCGCAACATCGATAATCCGGAAATTGCGGACATCTACACGGAACACTCGTGCGCGGTGAACGTGGCCAAGTACTCGCCGAGCGGGTTCTACATCGCCTCCGGCGACGCGTCGGGCAAGATCCGCATCTGGGACACGGTAAATAAGGAGCACATACTGAAGAATGAGTTCCAGCCGATCGGG] [+] EMBL BM599491 [CCGCGGACGCGTGGGGCCGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCCCAACAACAACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGGCCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCCGAGGCCAACCGATCGTGCTGGGCGGTGATCCGAAGGGCAAGAACTTCCTCTACACCAACGGCCATTCGGTGATTATCCGCAACATCGATAATCCGGAAATTGCGGACATCTACACGGAACACTCGTGCGCGGTGAACGTGGCCAAGTACTCGCCGAGCGGGTTCTACATCGCCTCCGGCGACGCGTCGGGCAAGATCCGCATCTGGGACACGGTAAATAAGGAGCACATACTGAAGAATGAGTTCCAGCCGATCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4078#0 ---------------CCGGTGC-GGTGTACGTGTGTATGTACTGCTTGTGCC--AACAAC 42 consensus_4078#2 CCGCGGACGCGTGGGGCCGTGC-GGTGTACGTGTGTATGTACTGCTTGTGCCCCAACAAC 59 consensus_4078#1 -------CCGGCCAATCGAAGCCGATCAATTCGTGCGATTTCCGCCCG-GCCCGCCCGTT 52 * ** * * * *** * * ** * *** * consensus_4078#0 AACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTC 102 consensus_4078#2 AACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTC 119 consensus_4078#1 CCGCATCGTGACCGGCAGTGAGGACAACACGATCGGCGT-GTTCGAGGGACCGCCGTTCA 111 ** * *** * * * ***** * * * * ***** consensus_4078#0 ACTGAACTGCAATCATGGCC-TATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACA 161 consensus_4078#2 ACTGAACTGCAATCATGGCCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACA 179 consensus_4078#1 AGTTCAAGATGACCA-AGCAGGACCACACCCGGTTCGTGCAGGCGGTGC-GCTACTCGCC 169 * * * * ** ** * * **** * * ** * ** * * consensus_4078#0 CAGC-GAGGCCAACCGATCGTGCTGGGTGGTGATCCGAAGAGCAAGAACTTCCTCTACAC 220 consensus_4078#2 CAGCCGAGGCCAACCGATCGTGCTGGGCGGTGATCCGAAGGGCAAGAACTTCCTCTACAC 239 consensus_4078#1 GAGC---GGCCACCTGTTCGCTTCGGCCG--GGTTCGATG-GCAAGGTGTTCATCTACGA 223 *** ***** * * *** ** * * * *** * ***** *** ***** consensus_4078#0 CAACGGGCATTCCGTGATTATCCGCAACATCGATAATCCCGAA-ATTGCGGACATCTACA 279 consensus_4078#2 CAACGGCCATTCGGTGATTATCCGCAACATCGATAATCCGGAA-ATTGCGGACATCTACA 298 consensus_4078#1 CGGTACCACGTCCGAGCTGGTCGGTGAGGTGGGCTCGCCGGCGCACAGTGGCGGTGTGTA 283 * ** * * * ** * * * * ** * * * ** * * * consensus_4078#0 CCGAACACTCCTGCGCGGTGAACG-TGGGCAAGTACTCGCCCA---GGGGGGTCTACATT 335 consensus_4078#2 CGGAACACTCGTGCGCGGTGAACG-TGGCCAAGTACTCGCCGA---GCGGGTTCTACATC 354 consensus_4078#1 CGGGGT-CGCCTGGAAGCCGGACGGTACGCAGCTGCTGACCTGCTCGGGCGACAAGTCCT 342 * * * * ** * * *** * ** * ** ** * * * consensus_4078#0 GC--GTTCCGGGACGCGTCTGGGAAAATTCCCATCTGGGGACACCGGGGAACCAGGAACC 393 consensus_4078#2 GC--CTCCGGCGACGCGTCGGGCAAGATCCGCATCTGGG-ACAC-GGTAAATAAGGAGCA 410 consensus_4078#1 GCCGGCTGTGGGACGTGGCGACGCGCACGCTCATCAGCGAGTTCCCGATGGGCAGCACGG 402 ** * **** * * * * **** * * * * ** * consensus_4078#0 C-TACTGGAAAATGAATTTCCCCCCCATTGGGGGGCCCAATCAAGGACATCTCCTGGTCG 452 consensus_4078#2 CATACTGAAGAATGAGTT-CCAGCCGATCGGG---------------------------- 441 consensus_4078#1 T-CGACGATCAGCAGGTGTCGTGTCTGTGGCAGGGCGACCACATCCTGTCCGTGTCGCTG 461 * * * * * * * consensus_4078#0 CCCGACAGCCAGCGGATCGTGATCGTGGGCGAGGGCCTGGGAAGCGGTTCGGGCACGTGT 512 consensus_4078#2 ------------------------------------------------------------ consensus_4078#1 TCCGG--GTTCATCAACTACCTCGATGTGAACAATCCCACCAAACCGCTGCGCATCGTGA 519 consensus_4078#0 TTATGGCGGAAACGGGCACCTCGGTGGGCGAGATTTCGGGCCAATCGAAGCCGATTAATT 572 consensus_4078#2 ------------------------------------------------------------ consensus_4078#1 AGGGCCACAACAAGCCGATCACGGTGCTGACGCTGAGCGACGATCGCAGCACGATCTACA 579 consensus_4078#0 CGTGCGATTTCCGGCCGGCCCGCCCGTTCCGTATCATCACTGGCAGCGAGGACAACACGA 632 consensus_4078#2 ------------------------------------------------------------ consensus_4078#1 ------------------------------------------------------------ consensus_4078#0 ATCGGCGTGTTCGAAGGGCCGCCGTTCAAGTTCAAGATGAC 673 consensus_4078#2 ----------------------------------------- consensus_4078#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||