These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [GCAGAATCGCGCACGAGGTCTATACGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATTGTCTGCCCGGAGCATTACAATCCGTCCGATTATTTGTTAGAAATAGCAACGCACGACTACGGCCGGCTGAACGACAGCCTGGTGGAAAAGATGATGAACGGGCAGAGCAACTTCTACCGCAATCCGGAACCGTTCGCGCCGACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAGCGACGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAGCTGTCGTTCAACCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTCGGGATCGGTAATCAGGCGGCGCAGATCTTCAACAACTACAACTACGTGTTCTTCTCGATCATGTTCTGATGTTTNACCGCGTTCAGGCTCAATGACCATTGGCGTTTCCACTCGAAGCTTGCCGATCATTACCGCGGGGAGGCACTTTTAAACCCGCTGGTACTCGGTTTGACGGGCGTTACTTACANTCGCCNATGACACGGGTGGCCGACAATTCCGGATCCANGCATGTCTGNACCNGGC] [+] EMBL BX467428 [GCAGAATCGCGCACGAGGTCTATACGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATTGTCTGCCCGGAGCATTACAATCCGTCCGATTATTTGTTAGAAATAGCAACGCACGACTACGGCCGGCTGAACGACAGCCTGGTGGAAAAGATGATGAACGGGCAGAGCAACTTCTACCGCAATCCGGAACCGTTCGCGCCGACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAGCGACGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAGCTGTCGTTCAACCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTCGGGATCGGTAATCAGGCGGCGCAGATCTTCAACAACTACAACTACGTGTTCTTCTCGATCATGTTCTGATGTTTNACCGCGTTCAGGCTCAATGACCATTGGCGTTTCCACTCGAAGCTTGCCGATCATTACCGCGGGGAGGCACTTTTAAACCCGCTGGTACTCGGTTTGACGGGCGTTACTTACANTCGCCNATGACACGGGTGGCCGACAATTCCGGATCCANGCATGTCTGNACCNGGC] consensusID : consensus_409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CAACCGTCCGCGCTGCTGTTCAACATGTTTGACCATCTGTACGCGGTCGCGGAGGGCGAATGCATCTATACCGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATCGTCTGCCCTGAGCATTACAATCCGTCCGATTACTTGTTAGAAATAGCAACGCACGACTACGGCCGGCTGAACGACAGTCTGGTAGAAAAAATGATGAACGGGCAGAGCAACTTCTACCGCAATCCGGAACCATTCTCGCCAACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAACGGCGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAGCTGTCGTTCAATCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTCGGGATCGGTAATCAGGC] [+] EMBL BX602059 [CAACCGTCCGCGCTGCTGTTCAACATGTTTGACCATCTGTACGCGGTCGCGGAGGGCGAATGCATCTATACCGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATCGTCTGCCCTGAGCATTACAATCCGTCCGATTACTTGTTAGAAATAGCAACGCACGACTACGGCCGGCTGAACGACAGTCTGGTAGAAAAAATGATGAACGGGCAGAGCAACTTCTACCGCAATCCGGAACCATTCTCGCCAACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAACGGCGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAGCTGTCGTTCAATCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTCGGGATCGGTAATCAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_409#0 ----------------------------------------GCAGAATCGCGCACGAGG-- 18 consensus_409#1 CAACCGTCCGCGCTGCTGTTCAACATGTTTGACCATCTGTACGCGGTCGCGGAGGGCGAA 60 * ***** * * * consensus_409#0 ----TCTATAC-GGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATTGTC 73 consensus_409#1 TGCATCTATACCGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATCGTC 120 ******* ******************************************** *** consensus_409#0 TGCCCGGAGCATTACAATCCGTCCGATTATTTGTTAGAAATAGCAACGCACGACTACGGC 133 consensus_409#1 TGCCCTGAGCATTACAATCCGTCCGATTACTTGTTAGAAATAGCAACGCACGACTACGGC 180 ***** *********************** ****************************** consensus_409#0 CGGCTGAACGACAGCCTGGTGGAAAAGATGATGAACGGGCAGAGCAACTTCTACCGCAAT 193 consensus_409#1 CGGCTGAACGACAGTCTGGTAGAAAAAATGATGAACGGGCAGAGCAACTTCTACCGCAAT 240 ************** ***** ***** ********************************* consensus_409#0 CCGGAACCGTTCGCGCCGACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCG 253 consensus_409#1 CCGGAACCATTCTCGCCAACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCG 300 ******** *** **** ****************************************** consensus_409#0 GACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAGCGACGACGCC 313 consensus_409#1 GACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAACGGCGACGCC 360 ************************************************* ** ******* consensus_409#0 CGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAG 373 consensus_409#1 CGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAG 420 ************************************************************ consensus_409#0 CTGTCGTTCAACCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGC 433 consensus_409#1 CTGTCGTTCAATCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGC 480 *********** ************************************************ consensus_409#0 CGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTG 493 consensus_409#1 CGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTG 540 ************************************************************ consensus_409#0 ATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTC 553 consensus_409#1 ATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTC 600 ************************************************************ consensus_409#0 GGGATCGGTAATCAGGCGGCGCAGATCTTCAACAACTACAACTACGTGTTCTTCTCGATC 613 consensus_409#1 GGGATCGGTAATCAGGC------------------------------------------- 617 ***************** consensus_409#0 ATGTTCTGATGTTTNACCGCGTTCAGGCTCAATGACCATTGGCGTTTCCACTCGAAGCTT 673 consensus_409#1 ------------------------------------------------------------ consensus_409#0 GCCGATCATTACCGCGGGGAGGCACTTTTAAACCCGCTGGTACTCGGTTTGACGGGCGTT 733 consensus_409#1 ------------------------------------------------------------ consensus_409#0 ACTTACANTCGCCNATGACACGGGTGGCCGACAATTCCGGATCCANGCATGTCTGNACCN 793 consensus_409#1 ------------------------------------------------------------ consensus_409#0 GGC 796 consensus_409#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||