These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [CCAGCCAGAATCGCCACGAGGTGATTGGATCAAGATGATGACGATCATCCGGACACTGAGCTGTATCTGACGCAACCGTTCGCTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCGCTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACGGGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGATATAGCACACCGGAAAGCTTGAAGGCANATCGCGACCGATGTCGCGTTGGACAGAGTATCGTTGGTACGAATGGACCGCGTGGCCACAGGTTCGGGGAGGCCGGGCNAAGTACGGCGATCTGTTCGTGGCCGGCACGTCAAATACGGTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAACCGGCGACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAG] [+] EMBL BX469479 [CCAGCCAGAATCGCCACGAGGTGATTGGATCAAGATGATGACGATCATCCGGACACTGAGCTGTATCTGACGCAACCGTTCGCTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCGCTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACGGGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGATATAGCACACCGGAAAGCTTGAAGGCANATCGCGACCGATGTCGCGTTGGACAGAGTATCGTTGGTACGAATGGACCGCGTGGCCACAGGTTCGGGGAGGCCGGGCNAAGTACGGCGATCTGTTCGTGGCCGGCACGTCAAATACGGTACGGC ] [+] EMBL BM621117 [ ccgTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCGCTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACGGGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGATATAGCACACCGGAAAGCTTGA GCA ATCGCGACCGATGTCGCGTTGGACAGA TATCGTT GTACG ATGGACCGC TGG CACA GTTCGGGGAGGCC GGC AAGTACGGCGATCTGTTCGTGGCC GCAC TCAAAT C GTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAACCGGCGACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAG] consensusID : consensus_4098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [AGAATNGCCCGAGGCTGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGTATATAGCACACCGGAAAGCTTGAGCAATCGCGACCGATGTCGCGTTGGACAGATATCGTTGTACGATGGACCGCTGGCACAGTTCGGGGAGGCCGGCAAGTACGGCGATCTGTTCGTGGCCGCACTCAAATCGTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAACCGGCAACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAGATTGCGCTCTACATCA] [+] EMBL AL931566 [AGAATNGCCCGAGGCTGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGTATATAGCACACCGGAAAGCTTGAGCAATCGCGACCGATGTCGCGTTGGACAGATATCGTTGTACGATGGACCGCTGGCACAGTTCGGGGAGGCCGGCAAGTACGGCGATCTGTTCGTGGCCGCACTCAAATCGTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAACCGGCAACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAGATTGCGCTCTACATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4098#0 CCAGCCAGAATCGCCACGAGGTGATTGGATCAAGATGATGACGATCATCCGGACACTGAG 60 consensus_4098#1 ------------------------------------------------------------ consensus_4098#0 CTGTATCTGACGCAACCGTTCGCTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCG 120 consensus_4098#1 ------------------------------------------------------------ consensus_4098#0 CTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACG 180 consensus_4098#1 ----------------------------------------------------------AG 2 * consensus_4098#0 GGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGA 240 consensus_4098#1 AATNGCCCGAGGCTGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGTA 62 * * * * * ******************************************** * consensus_4098#0 TATAGCACACCGGAAAGCTTGAAGGCANATCGCGACCGATGTCGCGTTGGACAGAGTATC 300 consensus_4098#1 TATAGCACACCGGAAAGCTTGAGC---AATCGCGACCGATGTCGCGTTGGACAGA-TATC 118 ********************** *************************** **** consensus_4098#0 GTTGGTACGAATGGACCGCGTGGCCACAGGTTCGGGGAGGCCGGGCNAAGTACGGCGATC 360 consensus_4098#1 GTTG-TACGA-TGGACCGC-TGGC-ACAG-TTCGGGGAGGCCGG--CAAGTACGGCGATC 171 **** ***** ******** **** **** ************** ************* consensus_4098#0 TGTTCGTGGCCGGCACGTCAAATACGGTACGGCATGCTCTGTATCGGTCTGTACCGATTC 420 consensus_4098#1 TGTTCGTGGCCG-CAC-TCAAATC--GTACGGCATGCTCTGTATCGGTCTGTACCGATTC 227 ************ *** ****** ********************************** consensus_4098#0 CGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCG 480 consensus_4098#1 CGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCG 287 ************************************************************ consensus_4098#0 GACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGG 540 consensus_4098#1 GACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGG 347 ************************************************************ consensus_4098#0 CTAGAGTATAAACCGGCGACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGC 600 consensus_4098#1 CTAGAGTATAAACCGGCAACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGC 407 ***************** ****************************************** consensus_4098#0 CAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACA-GGACGACAACTCCTGACTATTACTG 659 consensus_4098#1 CAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAAGGACGACAACTCCTGACTATTACTG 467 ********************************** ************************* consensus_4098#0 TGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATA 719 consensus_4098#1 TGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATA 527 ************************************************************ consensus_4098#0 TACCAG---------------- 725 consensus_4098#1 TACCAGATTGCGCTCTACATCA 549 ****** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||