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Anopheles gambiae
cluster # 4107 cluster # 4107       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4107#0 length = 789 sequences # 1  
consensus_4107#1 length = 568 sequences # 1  
consensus_4107#2 length = 514 sequences # 1  

consensusID : consensus_4107#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 789
fasta sequence
                              [AATCGCCCGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTGGTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGCTATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAAGGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATTGGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAACCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCCCATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGCGTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCAACACGTCGT]

[+] EMBL AL932410             [AATCGCCCGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTGGTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGCTATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAAGGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATTGGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAACCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCCCATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGCGTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCAACACGTCGT]


>consensus_4107#0 AATCGCCCGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTA GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTG GTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGT TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATC AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCG ACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGC TATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAA GGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATT GGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAA CCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCC CATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGC GTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCA ACACGTCGT



consensusID : consensus_4107#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence
                              [CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGATACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACACAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATTCATCCATCACACGATTTCGATCGATTTGGTG]

[+] EMBL BM630125             [CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGATACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACACAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATTCATCCATCACACGATTTCGATCGATTTGGTG]


>consensus_4107#1 CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGA TACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACA CAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAA AGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTA GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTGGTGTAATTG CGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGTTTGCGGTAA AGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATCAGTATGCGA TATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATTCAT CCATCACACGATTTCGATCGATTTGGTG



consensusID : consensus_4107#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence
                              [ATCCCCCGAGGTTAAGATGCGCGTGTGTATGGCGTTTGCGTTACGTCATTGACAGAACACAAAAAACCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTGTCTTCTTTTTTTTAATTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATTAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCGACGATTTATCCATCACACGATTTCGATCGATTTGGTGAG]

[+] EMBL AL931575             [ATCCCCCGAGGTTAAGATGCGCGTGTGTATGGCGTTTGCGTTACGTCATTGACAGAACACAAAAAACCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTGTCTTCTTTTTTTTAATTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATTAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCGACGATTTATCCATCACACGATTTCGATCGATTTGGTGAG]


>consensus_4107#2 ATCCCCCGAGGTTAAGATGCGCGTGTGTATGGCGTTTGCGTTACGTCATTGACAGAACAC AAAAAACCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAAAG GCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTAGT TCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTG ACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTGTCTTCTTTTTTTTAATTGGTGTA ATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCG GTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATTAGTAT GCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCGACGAT TTATCCATCACACGATTTCGATCGATTTGGTGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4107#1      CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGA 60
consensus_4107#2      -------------------------------------------------------ATCCC 5
consensus_4107#0      ------------------------------------------------------------
                                                                                  

consensus_4107#1      TACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACA 120
consensus_4107#2      C-CGAGGTT----AAGATGCGCGTGTGTATGGCGTTTGCGTTA-CGTCATTGACAGAACA 59
consensus_4107#0      ------------------------------------------------------------
                                                                                  

consensus_4107#1      CAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAA 180
consensus_4107#2      CAAAAAA-CCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAA 118
consensus_4107#0      ----------------------------------------------------------AA 2
                                                                                **

consensus_4107#1      AGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTA 240
consensus_4107#2      AGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTA 178
consensus_4107#0      TCGCC--CGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTA 60
                        ***    *   ****************************** ****************

consensus_4107#1      GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 300
consensus_4107#2      GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 238
consensus_4107#0      GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 120
                      ************************************************************

consensus_4107#1      TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTT---------G 351
consensus_4107#2      TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTT-GTCTTCTTTTTTTT--AATTG 295
consensus_4107#0      TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTG 180
                      ************************************** ***********         *

consensus_4107#1      GTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGT 411
consensus_4107#2      GTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGT 355
consensus_4107#0      GTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGT 240
                      **** *************************************************** ***

consensus_4107#1      TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATC 471
consensus_4107#2      TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATT 415
consensus_4107#0      TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATC 300
                      ************************************ ********************** 

consensus_4107#1      AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCG 531
consensus_4107#2      AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCG 475
consensus_4107#0      AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCG 360
                      ************************************************** *********

consensus_4107#1      ACGATTCATCCATCACACGATTTCGATCGAT--TTGGTG--------------------- 568
consensus_4107#2      ACGATTTATCCATCACACGATTTCGATCGAT--TTGGTGAG------------------- 514
consensus_4107#0      ACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGC 420
                      *****  ************************  *** **                     

consensus_4107#1      ------------------------------------------------------------
consensus_4107#2      ------------------------------------------------------------
consensus_4107#0      TATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAA 480
                                                                                  

consensus_4107#1      ------------------------------------------------------------
consensus_4107#2      ------------------------------------------------------------
consensus_4107#0      GGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATT 540
                                                                                  

consensus_4107#1      ------------------------------------------------------------
consensus_4107#2      ------------------------------------------------------------
consensus_4107#0      GGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAA 600
                                                                                  

consensus_4107#1      ------------------------------------------------------------
consensus_4107#2      ------------------------------------------------------------
consensus_4107#0      CCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCC 660
                                                                                  

consensus_4107#1      ------------------------------------------------------------
consensus_4107#2      ------------------------------------------------------------
consensus_4107#0      CATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGC 720
                                                                                  

consensus_4107#1      ------------------------------------------------------------
consensus_4107#2      ------------------------------------------------------------
consensus_4107#0      GTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCA 780
                                                                                  

consensus_4107#1      ---------
consensus_4107#2      ---------
consensus_4107#0      ACACGTCGT 789
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)