|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 985 fasta sequence
[AGAATCCCCCACCGANTTACGATATTGAACAAAAACAGCCAGAAAGGATGTAAAACACGTGCCGGCTGGATGCGCGCTTATCGATTGTTTGTGCGCAAGCCGCGTTTGTGACGAATGTTATGAAGCATGATAGTTAGGAGAAGCTTATAAAAACTAGCTGCAAGGCCGGTTGACCGTTTGTTGATGTATTTGATGTGTGATGTGTCTATTGGATGAAGAAAATTGTACCCCCATGTTATGCCTTCCAGTGGAAAATTTCAAAAACGCTCCGGGTTGGTTGATTCCTTCAATGTTTGTATTTCCCCTTTCCCCGCCACTCACGACCGCCTAGCTAGAGCGAAACAGCATGTGCATGACGTTATCAATGTGCCGGCTTGTAAACCCCTTGTTACTTGTTCCCTTGTTGATGTGGAGAAAGATGTTGTTGATTCCGCTGTCCTGTCTACTAACTATAATACTAAAATGAAGCAAAACCAAGAATGGAAGCGTTGTTAATGTTGGACAAGTGAGAAGCGTACGAACGAAACGGTGCAGCAGAAAGGTTTTTATCCTACTTAAACCCAAAAAAAAAACATGAATATTAACGCTAAATCTTTCACTATCTATATCTAAATGTTTCCTTAAAAAAACAAAACAAAAATCGAACCCTTATCGATGTACCTACCCAAGGCATCGTCTAACAACTTTAATGCTACTCACATTCTTCACGCTGCTGCTGATCGTTATCGTTATCTTATAAAACGTTGGCCGGGAATAGGAAAGTTTATGAAAAATCCAATTCTCCTTCCATCCCCCGTATGTCCCCTGTTCAATCCATACCAGTTGTTTCTACTGTTGTTGTGAGCATTGATTGGAACTGGAATTTGCTTTGCTTGGTAACAACAAAAGTTAACCNATCCCAGGAGAAGGTTGTAATATCCNGCCATAGCTTACGGACAAAAAAAGCATTCCGTAGAAGAACGAGAAAAGACTAATAAGAATCCTT]
[+] EMBL AL931591 [AGAATCCCCCACCGANTTACGATATTGAACAAAAACAGCCAGAAAGGATGTAAAACACGTGCCGGCTGGATGCGCGCTTATCGATTGTTTGTGCGCAAGCCGCGTTTGTGACGAATGTTATGAAGCATGATAGTTAGGAGAAGCTTATAAAAACTAGCTGCAAGGCCGGTTGACCGTTTGTTGATGTATTTGATGTGTGATGTGTCTATTGGATGAAGAAAATTGTACCCCCATGTTATGCCTTCCAGTGGAAAATTTCAAAAACGCTCCGGGTTGGTTGATTCCTTCAATGTTTGTATTTCCCCTTTCCCCGCCACTCACGACCGCCTAGCTAGAGCGAAACAGCATGTGCATGACGTTATCAATGTGCCGGCTTGTAAACCCCTTGTTACTTGTTCCCTTGTTGATGTGGAGAAAGATGTTGTTGATTCCGCTGTCCTGTCT ]
[+] EMBL BX623278 [ CCGCCACTCACGACCGCCTAGCTAGAGCGAAACAGCATGTGCATGACGTTATCAATGTGCCGGCTTGTAAACCCCTTGTTACTTGTTCCCTTGTTGATGTGGAGAAAGATGTTGTTGATTCCGCTGTCCTGTCTACTAACTATAATACTAAAATGAAGCAAAACCAAGAATGGAAGCGTTGTTAATGTTGGACAAGTGAGAAGCGTACGAACGAAACGGTGCAGCAGAAAGGTTTTTATCCTACTTAAACCCAAAAAAAAAACATGAATATTAACGCTAAATCTTTCACTATCTATATCTAAATGTTTCCTTAAAAAAACAAAACAAAAATCGAACCCTTATCGATGTACCTACCCAAGGCATCGTCTAACAACTTTAATGCTACTCACATTCTTCACGCTGCTGCTGATCGTTATCGTTATCTTATAAAACGTTGGCCGGGAATAGGAAAGTTTATGAAAAATCCAATTCTCCTTCCATCCCCCGTATGTCCCCTGTTCAATCCATACCAGTTGTTTCTACTGTTGTTGTGAGCATTGATTGGAACTGGAATTTGCTTTGCTTGGTAACAACAAAAGTTAACCNATCCCAGGAGAAGGTTGTAATATCCNGCCATAGCTTACGGACAAAAAAAGCATTCCGTAGAAGAACGAGAAAAGACTAATAAGAATCCTT]
consensusID : consensus_4114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[ATGTTAGGAAGAAGAGCAGAACAATAGCAACATCTCTCAGGCATAGGCCGCATAGGTTGGTGAAACAACTCCTTCAGCCACTGTACGTAATGGCTTTCGAGTGATAGAATTTCGCTGAATGGCCTAAAACAGGATACGGAGGGTTCGTGGTACAACAAAACATGAGAAACGAAATTTGCTCAGTACTTGGAGCCGAACCGACTTTTAACAAAAAACCCTTTAACCATGCCGTGCCAAAAAGCGGTTCCCAAATTCGATCCAGACCAAACGATATTGAACAAAAACAGCCAGAAAGGATGTAAAACACGTGCCGGCTGGATGCGCGCTTATCGATTGTTTGTGCGCAAGCCGCGTTTGTGACGAATGTTATGAAGCATGATAGTTAGGAGAAGCTTATAAAAACTAGCTGCAAGGCCGGTTGACCGTTTGTTGATGTATTTGATGTGTGATGTGTCTATTGGATGAAGAAAATTGTACCCCCATGTTATGCCTTCCAGTGGAAAATTTCAAAAACGCTCCGGGTTGGTTGATTCCTTCAATGTTTTGTATTTCCCCTTTCCCCGCCACTCACGAC]
[+] EMBL BX627755 [ATGTTAGGAAGAAGAGCAGAACAATAGCAACATCTCTCAGGCATAGGCCGCATAGGTTGGTGAAACAACTCCTTCAGCCACTGTACGTAATGGCTTTCGAGTGATAGAATTTCGCTGAATGGCCTAAAACAGGATACGGAGGGTTCGTGGTACAACAAAACATGAGAAACGAAATTTGCTCAGTACTTGGAGCCGAACCGACTTTTAACAAAAAACCCTTTAACCATGCCGTGCCAAAAAGCGGTTCCCAAATTCGATCCAGACCAAACGATATTGAACAAAAACAGCCAGAAAGGATGTAAAACACGTGCCGGCTGGATGCGCGCTTATCGATTGTTTGTGCGCAAGCCGCGTTTGTGACGAATGTTATGAAGCATGATAGTTAGGAGAAGCTTATAAAAACTAGCTGCAAGGCCGGTTGACCGTTTGTTGATGTATTTGATGTGTGATGTGTCTATTGGATGAAGAAAATTGTACCCCCATGTTATGCCTTCCAGTGGAAAATTTCAAAAACGCTCCGGGTTGGTTGATTCCTTCAATGTTTTGTATTTCCCCTTTCCCCGCCACTCACGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4114#0 ------------------------------------------------------------
consensus_4114#1 ATGTTAGGAAGAAGAGCAGAACAATAGCAACATCTCTCAGGCATAGGCCGCATAGGTTGG 60
consensus_4114#0 ------------------------------------------------------------
consensus_4114#1 TGAAACAACTCCTTCAGCCACTGTACGTAATGGCTTTCGAGTGATAGAATTTCGCTGAAT 120
consensus_4114#0 ------------------------------------------------------------
consensus_4114#1 GGCCTAAAACAGGATACGGAGGGTTCGTGGTACAACAAAACATGAGAAACGAAATTTGCT 180
consensus_4114#0 ------------------------------------------------------------
consensus_4114#1 CAGTACTTGGAGCCGAACCGACTTTTAACAAAAAACCCTTTAACCATGCCGTGCCAAAAA 240
consensus_4114#0 --------AGAATCCCCCACCGANTTA-CGATATTGAACAAAAACAGCCAGAAAGGATGT 51
consensus_4114#1 GCGGTTCCCAAATTCGATCCAGACCAAACGATATTGAACAAAAACAGCCAGAAAGGATGT 300
*** * * ** * ********************************
consensus_4114#0 AAAACACGTGCCGGCTGGATGCGCGCTTATCGATTGTTTGTGCGCAAGCCGCGTTTGTGA 111
consensus_4114#1 AAAACACGTGCCGGCTGGATGCGCGCTTATCGATTGTTTGTGCGCAAGCCGCGTTTGTGA 360
************************************************************
consensus_4114#0 CGAATGTTATGAAGCATGATAGTTAGGAGAAGCTTATAAAAACTAGCTGCAAGGCCGGTT 171
consensus_4114#1 CGAATGTTATGAAGCATGATAGTTAGGAGAAGCTTATAAAAACTAGCTGCAAGGCCGGTT 420
************************************************************
consensus_4114#0 GACCGTTTGTTGATGTATTTGATGTGTGATGTGTCTATTGGATGAAGAAAATTGTACCCC 231
consensus_4114#1 GACCGTTTGTTGATGTATTTGATGTGTGATGTGTCTATTGGATGAAGAAAATTGTACCCC 480
************************************************************
consensus_4114#0 CATGTTATGCCTTCCAGTGGAAAATTTCAAAAACGCTCCGGGTTGGTTGATTCCTTCAAT 291
consensus_4114#1 CATGTTATGCCTTCCAGTGGAAAATTTCAAAAACGCTCCGGGTTGGTTGATTCCTTCAAT 540
************************************************************
consensus_4114#0 GTTT-GTATTTCCCCTTTCCCCGCCACTCACGACCGCCTAGCTAGAGCGAAACAGCATGT 350
consensus_4114#1 GTTTTGTATTTCCCCTTTCCCCGCCACTCACGAC-------------------------- 574
**** *****************************
consensus_4114#0 GCATGACGTTATCAATGTGCCGGCTTGTAAACCCCTTGTTACTTGTTCCCTTGTTGATGT 410
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 GGAGAAAGATGTTGTTGATTCCGCTGTCCTGTCTACTAACTATAATACTAAAATGAAGCA 470
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 AAACCAAGAATGGAAGCGTTGTTAATGTTGGACAAGTGAGAAGCGTACGAACGAAACGGT 530
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 GCAGCAGAAAGGTTTTTATCCTACTTAAACCCAAAAAAAAAACATGAATATTAACGCTAA 590
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 ATCTTTCACTATCTATATCTAAATGTTTCCTTAAAAAAACAAAACAAAAATCGAACCCTT 650
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 ATCGATGTACCTACCCAAGGCATCGTCTAACAACTTTAATGCTACTCACATTCTTCACGC 710
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 TGCTGCTGATCGTTATCGTTATCTTATAAAACGTTGGCCGGGAATAGGAAAGTTTATGAA 770
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 AAATCCAATTCTCCTTCCATCCCCCGTATGTCCCCTGTTCAATCCATACCAGTTGTTTCT 830
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 ACTGTTGTTGTGAGCATTGATTGGAACTGGAATTTGCTTTGCTTGGTAACAACAAAAGTT 890
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 AACCNATCCCAGGAGAAGGTTGTAATATCCNGCCATAGCTTACGGACAAAAAAAGCATTC 950
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 CGTAGAAGAACGAGAAAAGACTAATAAGAATCCTT 985
consensus_4114#1 -----------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||