These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1187 fasta sequence [AGCAACAAAAAGGACTCNAATGGCAACAATAGCAAGAAGAAGCCGGAACCGAAGAACCGCGACAGTGCGATATGGTACGAGTATGGGTGTGTTTAGCGTGTATCGAAGTGTGTCCCCTCCCCAAGCGAAAAGCGTATTCAATGCAAGCATTTATTAGAAAACGAAGCATTGCAACCATAAGCCTATACGAGCAGTATTGTAGTGAGAGACAGAGAGAGGTGATGAAATAGGTGGCCTAGCATTTTTCGACTGATGATGGATGGCACGTTTTTGCTGCAGAAAGATGTGCAGGCGTGCGGATATGACGCCTACTGCGTTCCCCGCTCGAGAAGGCGATTGTACTTTTTTAATGCCGGCCGGTGCGTGTATGTGTGCGTTTAATGAACAACGTGCTTGCGTGTGCATGTGTGTGCGTGTTCGTCCATTCCGTACCAGCCCATATTTACCCAGTTAACAAGTGCTTTAACCTAAATACCACTTACAAAACACTCAACAGCAAAATAAGGCCTGAACAAAGTTTAATTTTAAAATAGGTCTTACGCGCACCCGTGTGATGCGTACGTTTTGGCGCATCTGTTTGGTTATTGCTCAATTGCGCGCTGCATGTCTCCCCCCGACACACACATTATGGNCTTTTCTTTTGCGCNAACTAATGCAGCTGCTTATTGAAACTATTGNCCAGATGAGTAAACTTTATCCCCAGTGCTTAGCGTTAATCTCTTCCCAAATGCCCTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAATACGTTTACATATATCTCGCTGCTATCCATTTCGATACAGGGTTCCGATAAAAAAAAAAACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTCCCGGCTACAGGACAGTTCAAACAGACGCTAATGCAGATGTTTGAAGGAGAAAACATGAATCTCTGAAGCGAAACGAATGAAGCAGAGGAATGAATCACCATTGCCGTTATTAGCATTTGTATTTAATCCTTTTTTAGGTTTAAAAGAAAGCATCGCAAAGGATGTAGAGTGAGAGAGATTTTTAAGTGAAATAAAGGTATAAAATAATTATACTCATAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BX627194 [AGCAACAAAAAGGACTCNAATGGCAACAATAGCAAGAAGAAGCCGGAACCGAAGAACCGCGACAGTGCGATATGGTACGAGTATGGGTGTGTTTAGCGTGTATCGAAGTGTGTCCCCTCCCCAAGCGAAAAGCGTATTCAATGCAAGCATTTATTAGAAAACGAAGCATTGCAACCATAAGCCTATACGAGCAGTATTGTAGTGAGAGACAGAGAGAGGTGATGAAATAGGTGGCCTAGCATTTTTCGACTGATGATGGATGGCACGTTTTTGCTGCAGAAAGATGTGCAGGCGTGCGGATATGACGCCTACTGCGTTCCCCGCTCGAGAAGGCGATTGTACTTTTTTAATGCCGGCCGGTGCGTGTATGTGTGCGTTTAATGAACAACGTGCTTGCGTGTGCATGTGTGTGCGTGTTCGTCCATTCCGTACCAGCCCATATTTACCCAGTTAACAAGTGCTTTAACCTAAATACCACTTACAAAACACTCAACAGCAAAATAAGGCCTGAACAAAGTTTAATTTTAAAATAGGTCTTACGCGCACCCGTGTGATGCGTACGTTTTGGCGCATCTGTTTGGTTATTGCTCAATTGCGCGCTGCATGTCTCCCCCCGACACACACATTATGGNCTTTTCTTTTGCGCNAACTAATGCAGCTGCTTATTGAAACTATTGNCCAGATGAGTAAACTTTATCCCCA ] [+] EMBL CNS08XRL [ AATTAATGCAGCTGCTTATTGAAACTATTGCACAGATGAGTAAACTTTATCCCAAGTGCTTAGCGTTAATCTCTTCCCAAATGCCCTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAATACGTTTACATATATCTCGCTGCTATCCATTTCGATACAGGGTTCCGATAAAAAAAAAAACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTCCCGGCTACAGGACAGTTCAAACAGACGCTAATGCAGATGTTTGAAGGAGAAAACATGAATCTCTGAAGCGAAACGAATGAAGCAGAGGAATGAATCACCATTGCCGTTATTAGCATTTGTATTTAATCCTTTTTTAGGTTTAAAAGAAAGCATCGCAAAGGATGTAGAGTGAGAGAGATTTTTAAGTGAAATAAAGGTATAAAATAATTATACTCATAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence [CTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAATACGTTTACATATATCTCGCTGCTATCCATTTTGAAACTAGTATTGTACGAACTAAATTGTAAGATTTGTATCGCGCCCGCTATCAACGTTTCCCTGCGCCCCGCCTTATCATTGGGCTCTCGATCGAAGCGTGAATGTAGTGTGTGTAACCTATACCACAACGAAATACCACTAACATACTTTCGTTTTTGTCTTGTGATAACACTTAAATGATATTTTGTTTGCCCTCCCTCCCCGAACATTTACCAACCATTTTTGAAAAGCGCAATTTTATTACTCCTCGGATGCTCGTGTTTTAGAGAGTTGTTGTGTAACAGGACTGTTCGATACAGGGTTCCGATAAAAAAAAAAAACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTTCCGGTTACAGGACAGATAAAACAGACGCTAATGCAAATGTTTGAAGGAGGAAAACATGAATCTGTGAAGCGAAACCAGTGTTGCGAACGGTGATAGTCGTCGACATAAAATTTTACAAAATGATACTTTTTGAAGCATCGCATTCTAGATCCACGCATTCATTCGACAATCACGGAAAAAAATATCATTTGACACGATGATATTTTTTCTGCTACNAGCATTTGACTTTTTGATTTTTCCGTACCTCAGGNGAACTAGATCTTCAT] [+] EMBL BX626615 [CTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAATACGTTTACATATATCTCGCTGCTATCCATTTTGAAACTAGTATTGTACGAACTAAATTGTAAGATTTGTATCGCGCCCGCTATCAACGTTTCCCTGCGCCCCGCCTTATCATTGGGCTCTCGATCGAAGCGTGAATGTAGTGTGTGTAACCTATACCACAACGAAATACCACTAACATACTTTCGTTTTTGTCTTGTGATAACACTTAAATGATATTTTGTTTGCCCTCCCTCCCCGAACATTTACCAACCATTTTTGAAAAGCGCAATTTTATTACTCCTCGGATGCTCGTGTTTTAGAGAGTTGTTGTGTAACAGGACTGTTCGATACAGGGTTCCGATAAAAAAAAAAAACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTTCCGGTTACAGGACAGATAAAACAGACGCTAATGCAAATGTTTGAAGGAGGAAAACATGAATCTGTGAAGCGAAACCAGTGTTGCGAACGGTGATAGTCGTCGACATAAAATTTTACAAAATGATACTTTTTGAAGCATCGCATTCTAGATCCACGCATTCATTCGACAATCACGGAAAAAAATATCATTTGACACGATGATATTTTTTCTGCTACNAGCATTTGACTTTTTGATTTTTCCGTACCTCAGGNGAACTAGATCTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4131#0 AGCAACAAAAAGGACTCNAATGGCAACAATAGCAAGAAGAAGCCGGAACCGAAGAACCGC 60 consensus_4131#1 ------------------------------------------------------------ consensus_4131#0 GACAGTGCGATATGGTACGAGTATGGGTGTGTTTAGCGTGTATCGAAGTGTGTCCCCTCC 120 consensus_4131#1 ------------------------------------------------------------ consensus_4131#0 CCAAGCGAAAAGCGTATTCAATGCAAGCATTTATTAGAAAACGAAGCATTGCAACCATAA 180 consensus_4131#1 ------------------------------------------------------------ consensus_4131#0 GCCTATACGAGCAGTATTGTAGTGAGAGACAGAGAGAGGTGATGAAATAGGTGGCCTAGC 240 consensus_4131#1 ------------------------------------------------------------ consensus_4131#0 ATTTTTCGACTGATGATGGATGGCACGTTTTTGCTGCAGAAAGATGTGCAGGCGTGCGGA 300 consensus_4131#1 ------------------------------------------------------------ consensus_4131#0 TATGACGCCTACTGCGTTCCCCGCTCGAGAAGGCGATTGTACTTTTTTAATGCCGGCCGG 360 consensus_4131#1 ------------------------------------------------------------ consensus_4131#0 TGCGTGTATGTGTGCGTTTAATGAACAACGTGCTTGCGTGTGCATGTGTGTGCGTGTTCG 420 consensus_4131#1 ------------------------------------------------------------ consensus_4131#0 TCCATTCCGTACCAGCCCATATTTACCCAGTTAACAAGTGCTTTAACCTAAATACCACTT 480 consensus_4131#1 ----------------CTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTA 44 * * * * * * ***** ** * * consensus_4131#0 ACAAAACACTCAACAGCAAAATAAGGCCTGAACAAAGTTTAATTTTAAAATAGGTCTTAC 540 consensus_4131#1 TGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAAT 104 ***** * * *** * * **** ***** * ** * * consensus_4131#0 GCGCACCCGTGTGATGCG----TACGTTTTGGCGCATCTGTTTGGTTATTGCTCAATTGC 596 consensus_4131#1 ACGTTTACATATATCTCGCTGCTATCCATTTTGAAACTAGTATTGTACGAACTAAATTGT 164 ** * * * ** ** ** * ** * ** ** ***** consensus_4131#0 GCGCTGCATGTCTCCCCCCGACACACACATTATGGNCTTTTCTTTTGCGCNAACTAATGC 656 consensus_4131#1 AAGATTTGTATCGCGCCC-GCTATCAACGTT---TCCCTGCGCCCCGCCTTATC--ATTG 218 * * * ** * *** * * ** ** * * ** * * ** consensus_4131#0 AGCTGCTTATTGAAACTATTGNCCAG-ATGAGTAAACTTTATCCCCAGTGCTTAGCGTTA 715 consensus_4131#1 GGCTCTCGATCGAAGCGTGAATGTAGTGTGTGTAACCTATACCACAACGAAATACCACTA 278 *** ** *** * ** ** **** ** ** * * * ** * ** consensus_4131#0 ATCTCTTCCCAAATGCCCTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATT 775 consensus_4131#1 ACATACTTTCGTTTTTGTCTTGTG-ATAACACTTAAATGATATTTTGTTTGCCCTCCCTC 337 * * * * * * * * * * * * ***** ** * * consensus_4131#0 ATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAA 835 consensus_4131#1 CCCGAACATTTACCAACCATTTTTGAAA-AGCGCAAT-TTTATTACTCCTCGGATGCTCG 395 ** * * ** * *** ** * * * ** *** * * * * * consensus_4131#0 TACGTTT-ACATATATCTCGCTGCTATCCATTTCGATACAGGGTTCCGATAAAAAAAAAA 894 consensus_4131#1 TGTTTTAGAGAGTTGTTGTGTAACAGGACTGTTCGATACAGGGTTCCGATAAAAAAAAAA 455 * ** * * * * * * * ***************************** consensus_4131#0 A-CAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTCCCGGC 953 consensus_4131#1 AACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTTCCGGT 515 * **************************************************** **** consensus_4131#0 TACAGGACAGTTCAAACAGACGCTAATGCAGATGTTTGAAGGAG-AAAACATGAATCTCT 1012 consensus_4131#1 TACAGGACAGATAAAACAGACGCTAATGCAAATGTTTGAAGGAGGAAAACATGAATCTGT 575 ********** * ***************** ************* ************* * consensus_4131#0 GAAGCGAAACGAATGAAGCAGA-GGAATGAATCACCATTGCCGTTATTAGCA-------- 1063 consensus_4131#1 GAAGCGAAACCAGTGTTGCGAACGGTGATAGTCGTCGACATAAAATTTTACAAAATGATA 635 ********** * ** ** * ** * ** * ** ** consensus_4131#0 -TTTGTATTTAATCCTTTTTTAGGTTTAAA---------AGAAAGCATCGCAAAGGATGT 1113 consensus_4131#1 CTTTTTGAAGCATCGCATTCTAGATCCACGCATTCATTCGACAATCACGGAAAAAAATAT 695 *** * *** ** *** * * ** ** * *** ** * consensus_4131#0 AGAGTGAGA-GAGATTTTTAAGTGAAATAAAGGTATAAAATAATTATACTCATAAAAAAA 1172 consensus_4131#1 CATTTGACACGATGATATTTTTTCTGCTACNAGCATTTGACTTTTTGATTTTTCCGTACC 755 *** * ** * ** * ** * ** * ** * * * * consensus_4131#0 AAAAAAAAAAAAAAA------ 1187 consensus_4131#1 TCAGGNGAACTAGATCTTCAT 776 * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||