These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence [CCGGGCAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCACACCCCATCCCACAACTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGTGAAGCAGTTGTGGTCGTTGTGAGCCG-AAAAAAGAAGGGAGTCGAGCAAAGAGGAGATCGATTAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATCATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAGCGGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTGAAGCGAGAAGCGAACGAAACGGAACGAAAAAAGTAAACCAGT--GTGAGAGAGAGAGTGAGAAAGAGTGAGTGGCAAAGGACGTA-GGAAGAGTGAAGTGAAGTAGTAGTGATCAATTAAAAAATGATAGCATGGGCCTCTG] [+] EMBL BM608129 [CCGGGCAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCACACCCCATCCCACAACTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGTGAAGCAGTTGTGGTCGTTGTGAGCCG AAAAAAGAAGGGAGTCGAGCAAAGAGGAGATCGATTAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATCATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAGCGGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTGAAGCGAGAAGCGAACGAAACGGAACGAAAAAAGTAAACCAGT GTGAGAGAGAGAGTGAGAAAGAGTGAGTGGCAAAGGACGTA GGAAGAGTGAAGTGAAGTAGTAGTGATCAATTAAAAAATGATAGCATGGGCCTCTG] [+] EMBL BM587714 [ ccgacggcaGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTGTCCACACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGTGAAACAGTTGTGGTCGTTGTGAGCCGAAAAAAAGAAGCGAGTCGAGCAAAAAGGAGATCGATCAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTGGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGAGGATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAGCGGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGT AGCGAACGAAACGGAACGAAAAAAGTAAACGAGTGAGAGAGAGAGAGAGTGAGAGGGAGTGAGTGGCAAAGGACGTATAAAAGAGTGAAGTGAAGCAGTAGTGATCAAT ] consensusID : consensus_4166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCACACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGAGACTGGATTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGAAACAGTAAAATTGCTCATTTTGTGAAAAAGTTGTGGTCGTTGTGAGCCGAAAAAAAGAAGTGAGTCGAGCGAAGAGGAGATCGATCAGCAGCGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATGATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACTAGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTAGCGAACGAAACGGAACGAAAAAAGTAAACGAGTGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGTGAGTGGCAAAGGACGTAGGAAGAGTGAAGTGTAGTAGTAGTGATCCATTAAAAAATGATAGCATGGGCCTCTGCTGGAATGTG] [+] EMBL BM651013 [CCGAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCACACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGAGACTGGATTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGAAACAGTAAAATTGCTCATTTTGTGAAAAAGTTGTGGTCGTTGTGAGCCGAAAAAAAGAAGTGAGTCGAGCGAAGAGGAGATCGATCAGCAGCGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATGATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACTAGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTAGCGAACGAAACGGAACGAAAAAAGTAAACGAGTGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGTGAGTGGCAAAGGACGTAGGAAGAGTGAAGTGTAGTAGTAGTGATCCATTAAAAAATGATAGCATGGGCCTCTGCTGGAATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4166#0 CCGGGCAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTC 60 consensus_4166#1 CCG---AAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTC 57 *** ****************************************************** consensus_4166#0 CACACCCCATCCCACAACTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGT 120 consensus_4166#1 CACACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGAGACTGGAT---TTAGT 114 **************** ************************** ****** * ***** consensus_4166#0 GCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGT 180 consensus_4166#1 GCGAAAATCGGTGGATATGTGGTGGACATACAGGAAA--CAGTAAAATTGCTCATTTTGT 172 *********************************** * ********************* consensus_4166#0 GAAGCAGTTGTGGTCGTTGTGAGCCGAAAAAA-GAAGGGAGTCGAGCAAAGAGGAGATCG 239 consensus_4166#1 GAAAAAGTTGTGGTCGTTGTGAGCCGAAAAAAAGAAGTGAGTCGAGCGAAGAGGAGATCG 232 *** *************************** **** ********* ************ consensus_4166#0 ATTAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTG 299 consensus_4166#1 ATCAGCAGCGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTG 292 ** ***** *************************************************** consensus_4166#0 GCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATCATGT 359 consensus_4166#1 GCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATGATGT 352 ******************************************************* **** consensus_4166#0 TACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGT 419 consensus_4166#1 TACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGT 412 ************************************************************ consensus_4166#0 TTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAG 479 consensus_4166#1 TTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACTAG 472 ********************************************************* ** consensus_4166#0 CGGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGG 539 consensus_4166#1 --------CGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGG 524 **************************************************** consensus_4166#0 TTGGTGGTGTAGTGTGAAGCGAGAAGCGAACGAAACGGAACGAAAAAAGTAAACCAGTGT 599 consensus_4166#1 TTGGTGGTGTAGTGT---------AGCGAACGAAACGGAACGAAAAAAGTAAACGAGTGA 575 *************** ****************************** **** consensus_4166#0 GAGAGAGAGAG------------TGAGAAAGAGTGAGTGGCAAAGGACGTAGGAAGAGTG 647 consensus_4166#1 GAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGTGAGTGGCAAAGGACGTAGGAAGAGTG 635 *********** ***** ******************************* consensus_4166#0 AAGTGAAGTAGTAGTGATCAATTAAAAAATGATAGCATGGGCCTCTG---------- 694 consensus_4166#1 AAGTGTAGTAGTAGTGATCCATTAAAAAATGATAGCATGGGCCTCTGCTGGAATGTG 692 ***** ************* *************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||