These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence [TTGCTAGCATTTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATCGATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCGCGTTAACCGCCAGCTGGCCGATGACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCTGCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGGAAAGGGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTCTTTA-CCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCATAGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATCAAAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTGTGGTTGTGCGTTAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAGCGAAG-TGCTGGAAGCCAAAATCGACCAGCGCCTTCAGCGAATCGCCCACCGACTTCAACCCACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTTTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCC-TATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTAATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAAT] [+] EMBL CNS08U55 [TTGCTAGCATTTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATCGATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCGCGTTAACCGCCAGCTGGCCGATGACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCTGCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGGAAAGGGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTCTTTA CCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCATAGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATCAAAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTGTGGTTGTGCGTTAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAGCGAAG TGCTGGAAGCCAAAATCGACCAGCGCCTTCAGCGAATCGCCCACCGACTTCAACCCACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTTTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCC TATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTAATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAAT] [-] EMBL CNS08U54 [ TTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATCGATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCG GTTAACCGCCAGCTGGCCGATGACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCTGCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGGAAAGGGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTCTTTAGCCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCATAGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATCAAAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTGTGGTTGTGCGTCAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAGCGAAGCTGCTGGAAGCCAAAATCGACCAGC CCTTCAGCGAATCGCCCACCGACTTCAACCCACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCCTTATG TGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTTATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAAT] consensusID : consensus_4180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CATGCCGAGCAGCGGGAATATCTTGAAGAACCGTTCCACCGGACGCGAGATCGTCGCGCTTGACCGCTTCGTCGAACTTTTGGTTTACCATTTGCTGCATCTGGACCGTCGCCTGCTCGAGCGTCGAAACCGCCTGGCTGACGGACGTTATCGATCCGCTCACATCATCGGCCGTCTTCTGGAGCAGCGTTTTGTCCATCGAAAGGAAGCGATTCACGTGCCCAGCGCCCTGCTCAAAGTCTTCCTCCCGGATTGCACTCATCACGCCCTGGCTGCAGAGCTGCAGATCGATCAGATCGTGAACCCGCTGCTGACACTCCGACACACGACTCCGCGCCTCATCCAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCCTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTTATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAATATCACTATCCTCGATGAATGCGTTTAATTTTAACATTTTTTACGCTAGGAAACTAACCGAAATTATTCTAAATAATACGGACTGTTTGCGAATGTTTACATTTCGG] [-] EMBL BM593077 [CATGCCGAGCAGCGGGAATATCTTGAAGAACCGTTCCACCGGACGCGAGATCGTCGCGCTTGACCGCTTCGTCGAACTTTTGGTTTACCATTTGCTGCATCTGGACCGTCGCCTGCTCGAGCGTCGAAACCGCCTGGCTGACGGACGTTATCGATCCGCTCACATCATCGGCCGTCTTCTGGAGCAGCGTTTTGTCCATCGAAAGGAAGCGATTCACGTGCCCAGCGCCCTGCTCAAAGTCTTCCTCCCGGATTGCACTCATCACGCCCTGGCTGCAGAGCTGCAGATCGATCAGATCGTGAACCCGCTGCTGACACTCCGACACACGACTCCGCGCCTCATCCAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCCTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTTATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAATATCACTATCCTCGATGAATGCGTTTAATTTTAACATTTTTTACGCTAGGAAACTAACCGAAATTATTCTAAATAATACGGACTGTTTGCGAATGTTTACATTTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4180#0 TTGCTAGCATTTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATC 60 consensus_4180#1 ------------------------------------------------------------ consensus_4180#0 GATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCGCGTTAACCGCCAGCTGGCCGATG 120 consensus_4180#1 ------------------------------------------------------------ consensus_4180#0 ACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCT 180 consensus_4180#1 ------------------------------------------------------------ consensus_4180#0 GCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGG 240 consensus_4180#1 -------------------------------------------------------CATGC 5 * * consensus_4180#0 AAAG-GGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTC 299 consensus_4180#1 CGAGCAGCGGGAATATCTTGA---AGAACCGTTCCACCGGAC-GCGAGATCGTCGCG--C 59 ** ** **** ** *** ** *** *** ** ** * * ***** * consensus_4180#0 TTTACCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCA 359 consensus_4180#1 TTGACCGCTTCGTCGAACTTT--TGGTTTACCATTTGCTGCA-TCTGGACCGTCGCC--- 113 ** ***** ** * * * * * * * ** * **** *** consensus_4180#0 TAGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATC 419 consensus_4180#1 TGCTCGAGCGTCGAAACCGCCTGGCTGACGGACGTTATCGATCCGCTCACATCATCGGCC 173 * * * *** ** * *** *** ** * * * ** * * ** * consensus_4180#0 AAAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTG 479 consensus_4180#1 GTCTTCTGGAGCAGCGTTTTGTCCATC-----GAAAGGAAGCGATTCACGTGCCCAGC-- 226 *** * * ***** * * * * * *** ** * * consensus_4180#0 TGGTTGTGCGTTAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAG 539 consensus_4180#1 --GCCCTGC-TCAAAGTCTTCCTCCCGGATTGCACTCATCACGCCCTGGCTGCAGAGCTG 283 * *** * * * ** * * * * * * * ** ** ** ** * consensus_4180#0 CGAAGTGCTGGAAGCCAAAATCGACCAGCGCCTTCAGCGAATCGCCCACCGACTTCAACC 599 consensus_4180#1 CAGATCGATCAGATCGTGAACC------CGCTGCTGACACTCCGACACACGACTCCG--C 335 * * * * * * ** * *** * ** * ***** * * consensus_4180#0 CACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTTTTGCCGTGTGATTG 659 consensus_4180#1 GCCTCATCCAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTG 395 * ** ************************************* ************** consensus_4180#0 ATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACC 719 consensus_4180#1 ATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACC 455 ************************************************************ consensus_4180#0 CCTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGG 779 consensus_4180#1 CCTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGG 515 ************************************************************ consensus_4180#0 GAATCGATTTGTTGCTCTTTCGATGTAATCCGTTGGCATACTTCTTCTATGCCTTCCGTG 839 consensus_4180#1 GAATCGATTTGTTGCTCTTTCGATGTTATCCGTTGGCATACTTCTTCTATGCCTTCCGTG 575 ************************** ********************************* consensus_4180#0 GTGCTAAT---------------------------------------------------- 847 consensus_4180#1 GTGCTAATATCACTATCCTCGATGAATGCGTTTAATTTTAACATTTTTTACGCTAGGAAA 635 ******** consensus_4180#0 ------------------------------------------------------ consensus_4180#1 CTAACCGAAATTATTCTAAATAATACGGACTGTTTGCGAATGTTTACATTTCGG 689 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||