These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence [AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAAGCCGGTCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGAGATAAACGAGTCGGCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATGGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGA-CTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGCAGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTATCAGGCCGATTCTTCGTCACAGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAACGCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTGGCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAATCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGCA] [+] EMBL AL930495 [AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAAGCCGGTCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGAGATAAACGAGTCGGCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATGGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGA CTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGT ] [+] EMBL BX620613 [ CTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAA GGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGACCTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGCAGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTATCAGGCCGATTCTTCGTCACAGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAACGCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTGGCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAATCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGCA] consensusID : consensus_4218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTGCGAGACGCTGCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTGCTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTGGATTTGCAGACTCGACAGACGACGGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTTGTGCGAAAGCAGGAACCAATTTCTCTGGCCCGACAAAATCGCACGATGAAGCGTAACCACTGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGATCTCGTGCTGACGATGAGCAAGATGGACAAATTCCAGCAGATCAAGCTGCCGTACACCATCACCAGAGAGAAGCGCGTACCGCTAAAGAACCCGCTCGTCACGCAAACGGTGGAGGTCATGAAGCAGACCGAAATGATCCAAACGCTCATCGACACGTACTCCACCAAGTCGGGCTGCAACTACATACTGAACCCGTGCCAGCTGATGCCGACCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC] [+] EMBL BM600393 [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTGCGAGACGCTGCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTGCTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTGGATTTGCAGACTCGACAGACGACGGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTTGTGCGAAAGCAGGAACCAATTTCTCTGGCCCGACAAAATCGCACGATGAAGCGTAACCACTGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGATCTCGTGCTGACGATGAGCAAGATGGACAAATTCCAGCAGATCAAGCTGCCGTACACCATCACCAGAGAGAAGCGCGTACCGCTAAAGAACCCGCTCGTCACGCAAACGGTGGAGGTCATGAAGCAGACCGAAATGATCCAAACGCTCATCGACACGTACTCCACCAAGTCGGGCTGCAACTACATACTGAACCCGTGCCAGCTGATGCCGACCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4218#0 AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTG-CCG 59 consensus_4218#1 ------------------------------CCGCGGACGCGTGGGCGGACGCGTGGGCCG 30 * ** * *** * ** * * *** consensus_4218#0 GACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAA--GCCGG 117 consensus_4218#1 TGCGAGACGCT------GCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTG 84 ******** ** * ** * *** * * * * * ** * consensus_4218#0 TCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGA 177 consensus_4218#1 CTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTG--GATTTGCA-GACTCGACAGACGAC 141 * * * * * ** *** * * * **** * * ** consensus_4218#0 GATAAACGAGTCG---GCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCT 234 consensus_4218#1 GGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTT 201 * * **** * ****** ** ** *** * * *** * * * consensus_4218#0 GCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCC 294 consensus_4218#1 GTGCGAAAGCAGGAACCAATTTCTCTGGCCCGA-CAAAATCGCACGATGAAGC--GTAAC 258 * *** * ** * * ** **** ** * *** ** ** * consensus_4218#0 GACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGT-CTACCAGC 353 consensus_4218#1 CAC---TGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGAT 315 ** * * *** * * * * * *** ** * * * * * * consensus_4218#0 TGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATG 413 consensus_4218#1 CTCGTGCTGACGATGAGCAA--GATGGACAAATTCCAGCAGATCAAGCTGCCGTACAC-- 371 * ** * * * **** **** ** * * ** * ** ** consensus_4218#0 GACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATG 473 consensus_4218#1 --CATC-ACCAGAGAGA--AGCGCGTACCGCTAAAGAACCCGC--TCGTCACGCAAACGG 424 **** ***** * * ** * * ** ****** ** *** * ** * consensus_4218#0 CAGAAGCTGGGCGACTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACT 533 consensus_4218#1 TGGAGGTCATGAAGCAGACCGAAATGATCCAAACG---CTCATCGACACGTACTCCACCA 481 ** * * * ** ** * * * * * * **** ** * ** * consensus_4218#0 CGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCG 593 consensus_4218#1 AGTCGGGCTGCA--ACTACATACTGAAC---------CCGTGCCAGCT-----GATGCCG 525 **** * *** ** * ** * ** * * ** ** * * ** consensus_4218#0 AAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGC 653 consensus_4218#1 A--CCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGC 583 * * ** * * * * ** * * * * ** * * * * * ***** consensus_4218#0 AGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTAT---CAGGCCGATTCTTCGTCAC 710 consensus_4218#1 GCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC---------- 633 * ** * *** * ** ** * ** * * ** *** consensus_4218#0 AGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAAC 770 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 GCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTG 830 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 GCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAA 890 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 TCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGC 950 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 A 951 consensus_4218#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||