These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence [TGAAACACGTTCCATTAAAGTGAAGCAGATAAACGATTCTCGCTACGTAGGAATGAGCATTTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTGTTGCCATGGTGATAGCTTCGCAACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCATGTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGAATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATTAATTTCCGAAAATGATGATTTACAGAAATTGATAGCTCAAAAAGAAGACAAAATACGACTGCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAATGAATCCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCATACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTATATTTTAAAAAGTGTATATTTT] [+] EMBL BX620767 [TGAAACACGTTCCATTAAAGTGAAGCAGATAAACGATTCTCGCTACGTAGGAATGAGCATTTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTGTTGCCATGGTGATAGCTTCGCAACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCATGTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGAATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATTAATTTCCGAAAATGATGATTTACAGAAATTGATAGCTCAAAAAGAAGACAAAATACGACTGCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAATGAATCCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCATACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTATATTTTAAAAAGTGTATATTTT] [+] EMBL BX612933 [ TACGTAGGAATGAGCATTTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTTTTGCCATGGTGATAGCTTCGCAACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCATGTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGAATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATTAATTTCCGAAAATGATGATTTACAGAAATTGATAGCTC AAAGAAGACAAAATACGACTGCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAATGAATCCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATTATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAAT TTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCGTACGACAATTCCTCAATAAAATAGGAGAAAGCAAC ] consensusID : consensus_4267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [CCGATGCAATTCAATCGATCATCTTCAACCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCGTACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTAATA] [+] EMBL BM592025 [CCGATGCAATTCAATCGATCATCTTCAACCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCGTACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4267#0 TGAAACACGTTCCATTAAAGTGAAGCAGATAAACGATTCTCGCTACGTAGGAATGAGCAT 60 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 TTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTGTTGCCATGGTGATAGCTTCGCA 120 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 ACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCAT 180 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 GTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGA 240 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 ATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATT 300 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 AATTTCCGAAAATGATGATTTACAGAAATTGATAGCTCAAAAAGAAGACAAAATACGACT 360 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 GCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAA-TGAAT 419 consensus_4267#1 --------------------------------CCGATGCAATTCAATCGATCATCTTCAA 28 ** * *** * * * * * consensus_4267#0 CCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAG 479 consensus_4267#1 CCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAG 88 ************************************************************ consensus_4267#0 CTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTT 539 consensus_4267#1 CTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTT 148 ************************************************************ consensus_4267#0 ATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAAT 599 consensus_4267#1 ATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAAT 208 ************************************************************ consensus_4267#0 TGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAA 659 consensus_4267#1 TGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAA 268 ************************************************************ consensus_4267#0 TCCATACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAAT 719 consensus_4267#1 TCCGTACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAAT 328 *** ******************************************************** consensus_4267#0 TTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTATATTTTAAAAAGTGTATATTTT 778 consensus_4267#1 TTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTA-ATA------------------ 368 ************************************* ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||