cluster # 4274

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4274 cluster # 4274 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4274#0 length = 705 sequences # 2

consensus_4274#1 length = 505 sequences # 1

consensusID : consensus_4274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 705
fasta sequence

                              [AAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTCGCTCTCAAAGTAGTACTAGCAGGAAGTTTAGTAGTGCTGCTGAGAGGAGAAAGTTTAGTGCCAGGTCTGGAAATGGGAAGAAAAGCAGCTTTTAAATTCATTCGTATGATAATTAGATCTGTGTTCTGACATAGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCTGCGCTGGGTAGGGAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGATTACTCTTTCTATTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGTGCGTGTGTGTGTGTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGGATCGTAGCAGCAGCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAAGGGGCAGCAGTGTTAGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTGTATACATTTTGCTTTCATCTTAAAAGGAAAGCACTTCGAGAAAAA]

[+] EMBL BX621411             [AAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTCGCTCTCAAAGTAGTACTAGCAGGAAGTTTAGTAGTGCTGCTGAGAGGAGAAAGTTTAGTGCCAGGTCTGGAAATGGGAAGAAAAGCAGCTTTTAAATTCATTCGTATGATAATTAGATCTGTGTTCTGACATAGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCTGCGCTGGGTAGGGAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGATTACTCTTTCTATTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGTGCGTGTGTGTGTGTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGGATCGTAGCAGCAGCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAAGGGGCAGCAGTGTTAGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTGTATACATTTTGCTTTCATCTTAAAAGGAAAGCACTTCGAGAAAAA]
[+] EMBL BX623240             [                                               AAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTCGCTCTCAAAGTAGTACTAGCAGGAAGTTTAGTAGTGCTGCTGAGAGGAGAAAGTTTAGTGCCAGGTCTGGAAATGGGAAGAAAAGCAGCTTTTAAATTCATTCGTATGATAATTAGATCTGTGTTCTGACATAGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCTGCGCTGGGTAGGGAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGATTACTCTTTCTATTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGTGCGTGTGTGTGTGTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGGATCGTAGCAGCAGCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAANGGGCAGCAGTGTTAGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTGTATACATTTTGCTTTCATC TAAAAGGAAAGCACT          ]




>consensus_4274#0
AAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGC
AAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTT
AAGCTTAAGCTAATTTATTCCGACTAGTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTC
GCTCTCAAAGTAGTACTAGCAGGAAGTTTAGTAGTGCTGCTGAGAGGAGAAAGTTTAGTG
CCAGGTCTGGAAATGGGAAGAAAAGCAGCTTTTAAATTCATTCGTATGATAATTAGATCT
GTGTTCTGACATAGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCT
GCGCTGGGTAGGGAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGA
TTACTCTTTCTATTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGT
GCGTGTGTGTGTGTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGG
ATCGTAGCAGCAGCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAAGG
GGCAGCAGTGTTAGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTG
TATACATTTTGCTTTCATCTTAAAAGGAAAGCACTTCGAGAAAAA

consensusID : consensus_4274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [AGGCAAGAATTCCCGGCACGANGGTCGCAAGTATAAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTACGCTCTCAAGAGTAGGTACTAGCCAGGAAGTTTAGTAGGTGCTGCTGAGAAGGGAGGAAAAACGTTTAGGTGCCAGGTCTGGAAGATGGGAAGAAAGCAGCTTTTAAATTTCATTCGGTAATGAATAACATCTAGATTCTGTTGTTTCTGACCATAGCCCGTTCTACCTGTTGGCACTTTTTAAAAAGGCACCCAATACGGCTTCCTATCGGTAACCCGGTCCCTGGCCGCCTGGGNGATTAAGGGGAAGAAATTTGGAAACTCCGGTTGTTTACACACACAAGNCACAA]

[+] EMBL BX468758             [AGGCAAGAATTCCCGGCACGANGGTCGCAAGTATAAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTACGCTCTCAAGAGTAGGTACTAGCCAGGAAGTTTAGTAGGTGCTGCTGAGAAGGGAGGAAAAACGTTTAGGTGCCAGGTCTGGAAGATGGGAAGAAAGCAGCTTTTAAATTTCATTCGGTAATGAATAACATCTAGATTCTGTTGTTTCTGACCATAGCCCGTTCTACCTGTTGGCACTTTTTAAAAAGGCACCCAATACGGCTTCCTATCGGTAACCCGGTCCCTGGCCGCCTGGGNGATTAAGGGGAAGAAATTTGGAAACTCCGGTTGTTTACACACACAAGNCACAA]




>consensus_4274#1
AGGCAAGAATTCCCGGCACGANGGTCGCAAGTATAAGCGCAAAACCAACCTCCCTTTTAC
GCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCC
TAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTA
GTTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTACGCTCTCAAGAGTAGGTACTAGCCA
GGAAGTTTAGTAGGTGCTGCTGAGAAGGGAGGAAAAACGTTTAGGTGCCAGGTCTGGAAG
ATGGGAAGAAAGCAGCTTTTAAATTTCATTCGGTAATGAATAACATCTAGATTCTGTTGT
TTCTGACCATAGCCCGTTCTACCTGTTGGCACTTTTTAAAAAGGCACCCAATACGGCTTC
CTATCGGTAACCCGGTCCCTGGCCGCCTGGGNGATTAAGGGGAAGAAATTTGGAAACTCC
GGTTGTTTACACACACAAGNCACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4274#0      ----------------------------------AAGCGCAAAACCAACCTCCCTTTTAC 26
consensus_4274#1      AGGCAAGAATTCCCGGCACGANGGTCGCAAGTATAAGCGCAAAACCAACCTCCCTTTTAC 60
                                                        **************************

consensus_4274#0      GCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCC 86
consensus_4274#1      GCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCC 120
                      ************************************************************

consensus_4274#0      TAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTA 146
consensus_4274#1      TAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTA 180
                      ************************************************************

consensus_4274#0      GTT-CTGGGGCAAAAATGCTCCTTTTTCCCACTT-CGCTCTCAA-AGTAG-TACTAGC-A 201
consensus_4274#1      GTTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTACGCTCTCAAGAGTAGGTACTAGCCA 240
                      *** ****************************** ********* ***** ******* *

consensus_4274#0      GGAAGTTTAGTAG-TGCTGCTGAGAGGAGAAA------GTTTAG-TGCCAGGTCTGGAAA 253
consensus_4274#1      GGAAGTTTAGTAGGTGCTGCTGAGAAGGGAGGAAAAACGTTTAGGTGCCAGGTCTGGAAG 300
                      ************* *********** * **        ****** ************** 

consensus_4274#0      TGGGAAGAAAAGCAGCTTTTAAATT-CATTCGTATGATAATTAGATCTGTGTTCTGACAT 312
consensus_4274#1      ATGGGAAGAAAGCAGCTTTTAAATTTCATTCGGTAATGAATAACATCTAGATTCTGTTGT 360
                        ** *  ***************** ******      *** * ****   *****   *

consensus_4274#0      AGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCTGCGCTGGGTAGG 372
consensus_4274#1      TTCTGACCATAGCCCGTTCTACCTGTTGGCACTTTTTAAAA------------AGGCACC 408
                        * * * *  *  * **  *        * **  **   *             ** *  

consensus_4274#0      GAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGATTACTCTTTCTA 432
consensus_4274#1      CAATACGGCTTCCTATCGGTAACCCGGTCCCTG--GCCGCCTGGGNGATTAA-------G 459
                       *  *  *  ** * *    ** *   * * *   * * *      *****         

consensus_4274#0      TTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGTGCGTGTGTGTGT 492
consensus_4274#1      GGGAAGAAATTTGGAAACT-CCGGTTGTTTACACACACAAGNCACAA------------- 505
                         ** ***   * ** **  *   * ***** * * *     *                

consensus_4274#0      GTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGGATCGTAGCAGCA 552
consensus_4274#1      ------------------------------------------------------------
                                                                                  

consensus_4274#0      GCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAAGGGGCAGCAGTGTT 612
consensus_4274#1      ------------------------------------------------------------
                                                                                  

consensus_4274#0      AGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTGTATACATTTTGC 672
consensus_4274#1      ------------------------------------------------------------
                                                                                  

consensus_4274#0      TTTCATCTTAAAAGGAAAGCACTTCGAGAAAAA 705
consensus_4274#1      ---------------------------------