These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 705 fasta sequence [AAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTCGCTCTCAAAGTAGTACTAGCAGGAAGTTTAGTAGTGCTGCTGAGAGGAGAAAGTTTAGTGCCAGGTCTGGAAATGGGAAGAAAAGCAGCTTTTAAATTCATTCGTATGATAATTAGATCTGTGTTCTGACATAGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCTGCGCTGGGTAGGGAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGATTACTCTTTCTATTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGTGCGTGTGTGTGTGTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGGATCGTAGCAGCAGCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAAGGGGCAGCAGTGTTAGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTGTATACATTTTGCTTTCATCTTAAAAGGAAAGCACTTCGAGAAAAA] [+] EMBL BX621411 [AAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTCGCTCTCAAAGTAGTACTAGCAGGAAGTTTAGTAGTGCTGCTGAGAGGAGAAAGTTTAGTGCCAGGTCTGGAAATGGGAAGAAAAGCAGCTTTTAAATTCATTCGTATGATAATTAGATCTGTGTTCTGACATAGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCTGCGCTGGGTAGGGAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGATTACTCTTTCTATTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGTGCGTGTGTGTGTGTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGGATCGTAGCAGCAGCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAAGGGGCAGCAGTGTTAGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTGTATACATTTTGCTTTCATCTTAAAAGGAAAGCACTTCGAGAAAAA] [+] EMBL BX623240 [ AAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTCGCTCTCAAAGTAGTACTAGCAGGAAGTTTAGTAGTGCTGCTGAGAGGAGAAAGTTTAGTGCCAGGTCTGGAAATGGGAAGAAAAGCAGCTTTTAAATTCATTCGTATGATAATTAGATCTGTGTTCTGACATAGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCTGCGCTGGGTAGGGAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGATTACTCTTTCTATTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGTGCGTGTGTGTGTGTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGGATCGTAGCAGCAGCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAANGGGCAGCAGTGTTAGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTGTATACATTTTGCTTTCATC TAAAAGGAAAGCACT ] consensusID : consensus_4274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [AGGCAAGAATTCCCGGCACGANGGTCGCAAGTATAAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTACGCTCTCAAGAGTAGGTACTAGCCAGGAAGTTTAGTAGGTGCTGCTGAGAAGGGAGGAAAAACGTTTAGGTGCCAGGTCTGGAAGATGGGAAGAAAGCAGCTTTTAAATTTCATTCGGTAATGAATAACATCTAGATTCTGTTGTTTCTGACCATAGCCCGTTCTACCTGTTGGCACTTTTTAAAAAGGCACCCAATACGGCTTCCTATCGGTAACCCGGTCCCTGGCCGCCTGGGNGATTAAGGGGAAGAAATTTGGAAACTCCGGTTGTTTACACACACAAGNCACAA] [+] EMBL BX468758 [AGGCAAGAATTCCCGGCACGANGGTCGCAAGTATAAGCGCAAAACCAACCTCCCTTTTACGCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCCTAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTAGTTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTACGCTCTCAAGAGTAGGTACTAGCCAGGAAGTTTAGTAGGTGCTGCTGAGAAGGGAGGAAAAACGTTTAGGTGCCAGGTCTGGAAGATGGGAAGAAAGCAGCTTTTAAATTTCATTCGGTAATGAATAACATCTAGATTCTGTTGTTTCTGACCATAGCCCGTTCTACCTGTTGGCACTTTTTAAAAAGGCACCCAATACGGCTTCCTATCGGTAACCCGGTCCCTGGCCGCCTGGGNGATTAAGGGGAAGAAATTTGGAAACTCCGGTTGTTTACACACACAAGNCACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4274#0 ----------------------------------AAGCGCAAAACCAACCTCCCTTTTAC 26 consensus_4274#1 AGGCAAGAATTCCCGGCACGANGGTCGCAAGTATAAGCGCAAAACCAACCTCCCTTTTAC 60 ************************** consensus_4274#0 GCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCC 86 consensus_4274#1 GCAAACAAAACAGCGCAGCGCAAGGAGTGGCAGCAAAAGCAAAGCACCATTGTAGTCGCC 120 ************************************************************ consensus_4274#0 TAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTA 146 consensus_4274#1 TAATGAGTAACAATGAAAAGAAAAGCATTATTTTAAGCTTAAGCTAATTTATTCCGACTA 180 ************************************************************ consensus_4274#0 GTT-CTGGGGCAAAAATGCTCCTTTTTCCCACTT-CGCTCTCAA-AGTAG-TACTAGC-A 201 consensus_4274#1 GTTTCTGGGGCAAAAATGCTCCTTTTTCCCACTTACGCTCTCAAGAGTAGGTACTAGCCA 240 *** ****************************** ********* ***** ******* * consensus_4274#0 GGAAGTTTAGTAG-TGCTGCTGAGAGGAGAAA------GTTTAG-TGCCAGGTCTGGAAA 253 consensus_4274#1 GGAAGTTTAGTAGGTGCTGCTGAGAAGGGAGGAAAAACGTTTAGGTGCCAGGTCTGGAAG 300 ************* *********** * ** ****** ************** consensus_4274#0 TGGGAAGAAAAGCAGCTTTTAAATT-CATTCGTATGATAATTAGATCTGTGTTCTGACAT 312 consensus_4274#1 ATGGGAAGAAAGCAGCTTTTAAATTTCATTCGGTAATGAATAACATCTAGATTCTGTTGT 360 ** * ***************** ****** *** * **** ***** * consensus_4274#0 AGCCGTCTACTGTGCATTTAAAGCACCATCGCTCCTTCGTACCGTCCTGCGCTGGGTAGG 372 consensus_4274#1 TTCTGACCATAGCCCGTTCTACCTGTTGGCACTTTTTAAAA------------AGGCACC 408 * * * * * * ** * * ** ** * ** * consensus_4274#0 GAGAATTGAATCGTTTTAAAAAGCAATTGCGTACAGTCTCTCTAAGGATTACTCTTTCTA 432 consensus_4274#1 CAATACGGCTTCCTATCGGTAACCCGGTCCCTG--GCCGCCTGGGNGATTAA-------G 459 * * * ** * * ** * * * * * * * ***** consensus_4274#0 TTTAAAAAAACGGAAATCTGTCCACTTTTTACTCTCTCCGTTAAGTGTGCGTGTGTGTGT 492 consensus_4274#1 GGGAAGAAATTTGGAAACT-CCGGTTGTTTACACACACAAGNCACAA------------- 505 ** *** * ** ** * * ***** * * * * consensus_4274#0 GTTGGTTGTGTGATATGTATCGTTCATATTCAAATTGGCTTCAAATGGATCGTAGCAGCA 552 consensus_4274#1 ------------------------------------------------------------ consensus_4274#0 GCAGCAGCAGTACCAGTACAAATGTGTGTATAGATTTAGAAGATAAGGGGCAGCAGTGTT 612 consensus_4274#1 ------------------------------------------------------------ consensus_4274#0 AGGGCTCACGTGAAGTAGATTGCCATTAGTAGATTTCCTTTTTTTTTGTATACATTTTGC 672 consensus_4274#1 ------------------------------------------------------------ consensus_4274#0 TTTCATCTTAAAAGGAAAGCACTTCGAGAAAAA 705 consensus_4274#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||