These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 711 fasta sequence [CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCCCACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATTGTGTTGTTGTATCGATGCATCAACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGAATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAAT-CCATTTGAAGCTGCTGG-AAATGAT-CCGGTAGATGAATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG] [+] EMBL BM591602 [CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCCCACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATTGTGTTGTTGTATCGATGCATCAACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGAATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAAT CCATTTGAAGCTGCTGG AAATGAT CCGGTAGATG ] [-] EMBL BM599459 [ TTA GGTGGATTCGGCCGGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCCATTTGAAGCTGCTGGAAAATGATCCCGGTAGATGAATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG] consensusID : consensus_4288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [GTAGCATATATAACCGCAGGCATGCGAACGGGTCGTCTCTGACCAGAGGATACGTGTGCTGTAGTTGTGATTGCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCCAGCCGATCATTCGCGCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGGTGGATTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGAAACCATCGTGCCGATTCTTGGCCTCG] [-] EMBL BX467959 [GTAGCATATATAACCGCAGGCATGCGAACGGGTCGTCTCTGACCAGAGGATACGTGTGCTGTAGTTGTGATTGCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCCAGCCGATCATTCGCGCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGGTGGATTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGAAACCATCGTGCCGATTCTTGGCCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4288#0 CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCC 60 consensus_4288#1 ----------------------------------------------GTAGCATATATAAC 14 *** * * * consensus_4288#0 CACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATT 120 consensus_4288#1 CGCAGGCATG-CGAACGGGTCGTCTCTGACCAGAGGATACGTG-TGCTGTAGTTGTGATT 72 * * ** ** * ** * ** * * * *** * ** ********** consensus_4288#0 G-TGTTGTTGTA-TCGATGCATCA-ACACCACCCCATCCCATCTTTGAGACAGGCAAGCG 177 consensus_4288#1 GCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCG 132 * ********** *********** *********************************** consensus_4288#0 GCACGCAATGGAGAA-TATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCA 236 consensus_4288#1 GCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCA 192 ************** ******************************************** consensus_4288#0 ACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACT 296 consensus_4288#1 ACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACT 252 ************************************************************ consensus_4288#0 TATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGT 356 consensus_4288#1 TATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGT 312 ************************* ****************************** *** consensus_4288#0 ATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCG 416 consensus_4288#1 ATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCG 372 ************************************************************ consensus_4288#0 CCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCG 476 consensus_4288#1 CCAGCCAGCCGA-TCATTCGCGC----ATCTAGTGTCCGGACCATTTTTGCGACCAGCCG 427 ***** **** * ********** ********************************* consensus_4288#0 CCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGG 536 consensus_4288#1 CCGTGCTTCTCATGTT--CCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGG 485 **************** ****************************************** consensus_4288#0 ATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCA 596 consensus_4288#1 ATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGG-TGGATTCGGCCCGCTGGGTCCA 544 ********************** ************** *** ****************** consensus_4288#0 GAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGGAAATGATCCGGTAGATGA 656 consensus_4288#1 GAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTG-AAACCATCGTGCCGATTC 603 ***************************************** *** *** * *** consensus_4288#0 ATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG 711 consensus_4288#1 TTGGCCTCG---------------------------------------------- 612 ** **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||