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Anopheles gambiae
cluster # 4288 cluster # 4288       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4288#0 length = 711 sequences # 2  
consensus_4288#1 length = 612 sequences # 1  

consensusID : consensus_4288#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 711
fasta sequence
                              [CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCCCACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATTGTGTTGTTGTATCGATGCATCAACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGAATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAAT-CCATTTGAAGCTGCTGG-AAATGAT-CCGGTAGATGAATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG]

[+] EMBL BM591602             [CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCCCACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATTGTGTTGTTGTATCGATGCATCAACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGAATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAAT CCATTTGAAGCTGCTGG AAATGAT CCGGTAGATG                                                        ]
[-] EMBL BM599459             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTA GGTGGATTCGGCCGGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCCATTTGAAGCTGCTGGAAAATGATCCCGGTAGATGAATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG]


>consensus_4288#0 CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCC CACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATT GTGTTGTTGTATCGATGCATCAACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCA CGCAATGGAGAATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTT ACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATT CTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGTATTG TATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAG CAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGT GCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGG TGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCAGAAC CACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGGAAATGATCCGGTAGATGAATGT GCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG



consensusID : consensus_4288#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [GTAGCATATATAACCGCAGGCATGCGAACGGGTCGTCTCTGACCAGAGGATACGTGTGCTGTAGTTGTGATTGCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCCAGCCGATCATTCGCGCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGGTGGATTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGAAACCATCGTGCCGATTCTTGGCCTCG]

[-] EMBL BX467959             [GTAGCATATATAACCGCAGGCATGCGAACGGGTCGTCTCTGACCAGAGGATACGTGTGCTGTAGTTGTGATTGCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCGGCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCGCCAGCCAGCCGATCATTCGCGCATCTAGTGTCCGGACCATTTTTGCGACCAGCCGCCGTGCTTCTCATGTTCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGGATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGGTGGATTCGGCCCGCTGGGTCCAGAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGAAACCATCGTGCCGATTCTTGGCCTCG]


>consensus_4288#1 GTAGCATATATAACCGCAGGCATGCGAACGGGTCGTCTCTGACCAGAGGATACGTGTGCT GTAGTTGTGATTGCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGA GACAGGCAAGCGGCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAG TGCGAGAGGCCAACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTT CCTTCACCCACTTATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGT GGTAGTTATGGTATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCA CGTGGTCAGCCGCCAGCCAGCCGATCATTCGCGCATCTAGTGTCCGGACCATTTTTGCGA CCAGCCGCCGTGCTTCTCATGTTCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATC GTTGGATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGGTGGATTCGGCCCGCTGGG TCCAGAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGAAACCATCGTGCCGA TTCTTGGCCTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4288#0      CCGATTTTAAGGGGGGCCTCCTCTTGCGCCGAGCCGGTGTGATCGGATAGGTTTATTCCC 60
consensus_4288#1      ----------------------------------------------GTAGCATATATAAC 14
                                                                     ***  *   *  *

consensus_4288#0      CACGATTTTGTCGTTTTGTGTGTGTGTGTGTGCATGCTGTGTGGTTGTGGAGTTGTGATT 120
consensus_4288#1      CGCAGGCATG-CGAACGGGTCGTCTCTGACCAGAGGATACGTG-TGCTGTAGTTGTGATT 72
                      * *     ** **    *   ** * **     * * *  *** *  ** **********

consensus_4288#0      G-TGTTGTTGTA-TCGATGCATCA-ACACCACCCCATCCCATCTTTGAGACAGGCAAGCG 177
consensus_4288#1      GCTGTTGTTGTACTCGATGCATCAGACACCACCCCATCCCATCTTTGAGACAGGCAAGCG 132
                      * ********** *********** ***********************************

consensus_4288#0      GCACGCAATGGAGAA-TATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCA 236
consensus_4288#1      GCACGCAATGGAGANATATGGGCAGAATCAACTATCAACACCGCGCAGTGCGAGAGGCCA 192
                      **************  ********************************************

consensus_4288#0      ACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACT 296
consensus_4288#1      ACTTACCAAAAACTTGATACACTCTACTAGCTGGTTTTCTATGACTTTCCTTCACCCACT 252
                      ************************************************************

consensus_4288#0      TATTCTTTCTATTCCCTTTTCTAATTGCTGCAGTTGGTTGAAGCAAGTGGTAGTTACGGT 356
consensus_4288#1      TATTCTTTCTATTCCCTTTTCTAATCGCTGCAGTTGGTTGAAGCAAGTGGTAGTTATGGT 312
                      ************************* ****************************** ***

consensus_4288#0      ATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCG 416
consensus_4288#1      ATTGTATATTATTACAACTGGTTTTCGACATCTCAACTAGCCTCGTCACGTGGTCAGCCG 372
                      ************************************************************

consensus_4288#0      CCAGCAAGCCAAGTCATTCGCGCTTCCATCTAGTGTCCGGACCATTTTTGCGACCAGCCG 476
consensus_4288#1      CCAGCCAGCCGA-TCATTCGCGC----ATCTAGTGTCCGGACCATTTTTGCGACCAGCCG 427
                      ***** **** * **********    *********************************

consensus_4288#0      CCGTGCTTCTCATGTTTCCCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGG 536
consensus_4288#1      CCGTGCTTCTCATGTT--CCCATGGTGGTCGCAGCTCTGCCGCTCCCGCCATATCGTTGG 485
                      ****************  ******************************************

consensus_4288#0      ATGGTGTGAACGGATACTGCATAAAGTTCATGTTAGGGTGGGTTCGGCCCGCTGGGTCCA 596
consensus_4288#1      ATGGTGTGAACGGATACTGCATGAAGTTCATGTTAGG-TGGATTCGGCCCGCTGGGTCCA 544
                      ********************** ************** *** ******************

consensus_4288#0      GAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTGGAAATGATCCGGTAGATGA 656
consensus_4288#1      GAACCACCAATGTTACCATGGTAATCCATTTGAAGCTGCTG-AAACCATCGTGCCGATTC 603
                      ***************************************** ***  ***  *  ***  

consensus_4288#0      ATGTGCTCGTCCATGTACTGTCTGTTCATTCCCGCCGCCGTTAGCCAGGGAACGG 711
consensus_4288#1      TTGGCCTCG---------------------------------------------- 612
                       **  ****                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)